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Answer: Answer: cutadapt tool
11 weeks ago by Brian Bushnell 20k
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365
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Answer: Answer: Sequence Duplication Levels in targeted sequencing
11 weeks ago by Brian Bushnell 20k
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2.0k
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Answer: Answer: how to know what adapter sequences to trim for RNA-seq?
11 weeks ago by Brian Bushnell 20k
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Answer: Answer: Variant caller for Ion Torrent data
11 weeks ago by Brian Bushnell 20k
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Answer: Answer: Processing fastq files for genome assembly
11 weeks ago by Brian Bushnell 20k
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15k
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Answer: Answer: Generating consensus sequence from bam file
11 weeks ago by Brian Bushnell 20k
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656
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Answer: Answer: Target deletions with adaptive sampling
11 weeks ago by Brian Bushnell 20k
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668
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Answer: Answer: Getting fasta file from the VCF after variant calling
11 weeks ago by Brian Bushnell 20k
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521
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Answer: Answer: PacBio subreads.fastq files?
5 months ago by Brian Bushnell 20k
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1.9k
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Answer: Answer: What apps can read large FASTQ files on Windows?
5 months ago by Brian Bushnell 20k
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854
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Answer: Answer: Read count vs Depth
5 months ago by Brian Bushnell 20k
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522
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Answer: Answer: Low coverage whole genome sequencing reveal excess heterozygosity for multiple S
5 months ago by Brian Bushnell 20k
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1.1k
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Answer: Answer: SPAdes error: finished abnormally, OS return value: 21
6 months ago by Brian Bushnell 20k
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1
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683
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Answer: Answer: subset a bam file
6 months ago by Brian Bushnell 20k
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951
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Answer: Answer: SNPs of a specific mouse strain
6 months ago by Brian Bushnell 20k
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1
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654
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Answer: Answer: selection of reference genome
6 months ago by Brian Bushnell 20k
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1.1k
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Answer: Answer: How to filter .fasta file based on conditional statement
6 months ago by Brian Bushnell 20k
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918
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Answer: Answer: Working with NCBI downloadable Datasets
6 months ago by Brian Bushnell 20k
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594
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Answer: Answer: Find all locations of aligned reads with MQ (Mapping Quality) = 0.
6 months ago by Brian Bushnell 20k
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735
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Answer: Answer: Is there a good software to generate test genomics data?
6 months ago by Brian Bushnell 20k
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356
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Answer: Answer: Shorten Illumina reads
6 months ago by Brian Bushnell 20k
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589
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Answer: Answer: Novaseq read coverage needed for demultiplexing
6 months ago by Brian Bushnell 20k
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1.9k
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Answer: Answer: BaseRecalibrator takes forever to run. Any suggestions?
6 months ago by Brian Bushnell 20k
4
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3
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1.8k
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Answer: Answer: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Brian Bushnell 20k
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432
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Answer: Answer: Trimming pair end fastq files merged not interleaved
6 months ago by Brian Bushnell 20k
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1.6k
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Answer: Answer: Poly-A trimming for WGBS
6 months ago by Brian Bushnell 20k
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428
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Answer: Answer: how to create a consensus sequence from different assemblies
6 months ago by Brian Bushnell 20k
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2
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1.4k
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Answer: Answer: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
6 months ago by Brian Bushnell 20k
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590
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Answer: Answer: Conceptual question about open reading frames
6 months ago by Brian Bushnell 20k
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486
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Answer: Answer: Do threads matter for host DNA removal with bbmap?
6 months ago by Brian Bushnell 20k
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893
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Answer: Answer: Detect contaminating organism
6 months ago by Brian Bushnell 20k
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883
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Answer: Answer: RNA-Seq with DNA contamination, any way to salvage the data?
6 months ago by Brian Bushnell 20k
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1
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7.8k
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Answer: Answer: Randomize Read Order In Multigbp Fastq File?
6 months ago by Brian Bushnell 20k
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1
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1.2k
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Answer: Answer: Tools for reference-guided de novo assembly of bacterial genome
7 months ago by Brian Bushnell 20k
3
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1
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618
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Answer: Answer: Exception in thread "main" java.lang.RuntimeException: Sequence and quality leng
7 months ago by Brian Bushnell 20k
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1.5k
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Answer: Answer: What is the best way to compute genetic distances between FASTQ files?
7 months ago by Brian Bushnell 20k
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0
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576
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Answer: Answer: Small RNA sequencing using Illumina 2 channel SBS: how to deal with Gs?
7 months ago by Brian Bushnell 20k
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1
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518
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Answer: Answer: Complexity curve for PE fastq files
7 months ago by Brian Bushnell 20k
3
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1
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763
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Answer: Answer: What are unbinned contigs ?
7 months ago by Brian Bushnell 20k
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2
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941
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Answer: Answer: BBtools callvariants.sh
7 months ago by Brian Bushnell 20k
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1.9k
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Answer: Answer: How to discard alignments from SAM/BAM file that have mismatches
7 months ago by Brian Bushnell 20k
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0
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934
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Answer: Answer: Repeat detection/masking in bacteria
7 months ago by Brian Bushnell 20k
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0
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797
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Answer: Answer: Deduplication
7 months ago by Brian Bushnell 20k
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0
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1.8k
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Answer: Answer: Aligning very short sequences using bowtie2, I need fine control over how many m
7 months ago by Brian Bushnell 20k
1
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0
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939
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Answer: Answer: Mitochondrial contig identification in fungal genome assemblies
7 months ago by Brian Bushnell 20k
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0
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429
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Answer: Answer: Partition reads in BAM file by MAG
7 months ago by Brian Bushnell 20k
1
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0
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1.6k
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Answer: Answer: Can BWA (mem) detect longer deletions?
7 months ago by Brian Bushnell 20k
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0
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948
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Answer: Answer: Average Coverage after Assembly (Spades)
7 months ago by Brian Bushnell 20k
1
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1
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722
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Answer: Answer: Detect STRs in illumina library
7 months ago by Brian Bushnell 20k
3
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1
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1.6k
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Answer: Answer: What is the correct procedure to generate a consensus bacterial sequence?
7 months ago by Brian Bushnell 20k
621 results • Page 1 of 13
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