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Answer: Answer: Find all locations of aligned reads with MQ (Mapping Quality) = 0.
6 months ago by Brian Bushnell 20k
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Comment: Comment: AVX error with Deepvariant caller
6 months ago by Brian Bushnell 20k
2
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744
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Answer: Answer: Is there a good software to generate test genomics data?
6 months ago by Brian Bushnell 20k
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362
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Answer: Answer: Shorten Illumina reads
6 months ago by Brian Bushnell 20k
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1.0k
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Comment: Comment: AVX error with Deepvariant caller
6 months ago by Brian Bushnell 20k
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624
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Comment: Comment: Regarding using a "pseudo reference genome" for aligning short reads
6 months ago by Brian Bushnell 20k
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1
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578
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Comment: Comment: Jellyfish problem with Failed to open input file 'reads.jf'
6 months ago by Brian Bushnell 20k
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1
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1.8k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Brian Bushnell 20k
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1.8k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Brian Bushnell 20k
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2
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1.8k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Brian Bushnell 20k
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0
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597
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Answer: Answer: Novaseq read coverage needed for demultiplexing
6 months ago by Brian Bushnell 20k
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1.6k
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Comment: Comment: Poly-A trimming for WGBS
6 months ago by Brian Bushnell 20k
1
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1.8k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Brian Bushnell 20k
1
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1
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1.8k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Brian Bushnell 20k
2
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0
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1.8k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Brian Bushnell 20k
0
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1
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1.8k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Brian Bushnell 20k
1
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1.9k
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Answer: Answer: BaseRecalibrator takes forever to run. Any suggestions?
6 months ago by Brian Bushnell 20k
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1
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543
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Comment: Comment: Query regarding callsets used as known sites in Variant Calling
6 months ago by Brian Bushnell 20k
4
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3
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1.8k
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Answer: Answer: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Brian Bushnell 20k
0
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1
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1.6k
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Comment: Comment: Poly-A trimming for WGBS
6 months ago by Brian Bushnell 20k
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0
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609
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Comment: Comment: Conceptual question about open reading frames
6 months ago by Brian Bushnell 20k
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0
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441
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Answer: Answer: Trimming pair end fastq files merged not interleaved
6 months ago by Brian Bushnell 20k
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1
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1.6k
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Answer: Answer: Poly-A trimming for WGBS
6 months ago by Brian Bushnell 20k
0
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1
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543
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Comment: Comment: Query regarding callsets used as known sites in Variant Calling
6 months ago by Brian Bushnell 20k
1
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0
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643
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Comment: Comment: salmon for gene expression quantification
6 months ago by Brian Bushnell 20k
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0
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763
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Comment: Comment: Quality filtering prior to pseudoalignment
6 months ago by Brian Bushnell 20k
1
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1
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1.4k
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Comment: Comment: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
6 months ago by Brian Bushnell 20k
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439
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Answer: Answer: how to create a consensus sequence from different assemblies
6 months ago by Brian Bushnell 20k
2
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1.4k
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Comment: Comment: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
6 months ago by Brian Bushnell 20k
2
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2
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1.4k
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Answer: Answer: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
6 months ago by Brian Bushnell 20k
1
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1
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609
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Answer: Answer: Conceptual question about open reading frames
6 months ago by Brian Bushnell 20k
1
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0
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492
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Answer: Answer: Do threads matter for host DNA removal with bbmap?
6 months ago by Brian Bushnell 20k
0
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0
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915
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Comment: Comment: Can clumpify.sh be used in a streaming fashion downstream of bcl-convert
6 months ago by Brian Bushnell 20k
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0
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911
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Answer: Answer: Detect contaminating organism
6 months ago by Brian Bushnell 20k
2
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2
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2.0k
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Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
6 months ago by Brian Bushnell 20k
1
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0
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1.7k
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Comment: Comment: How do I know how much memory to use when piping to with BBMap suite (OutOfMemor
6 months ago by Brian Bushnell 20k
1
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1
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895
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Answer: Answer: RNA-Seq with DNA contamination, any way to salvage the data?
6 months ago by Brian Bushnell 20k
1
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2
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915
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Comment: Comment: Can clumpify.sh be used in a streaming fashion downstream of bcl-convert
6 months ago by Brian Bushnell 20k
1
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0
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976
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Comment: Comment: Command line or python RNA-seq read simulator
6 months ago by Brian Bushnell 20k
1
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1
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2.0k
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Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
6 months ago by Brian Bushnell 20k
2
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1
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7.8k
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Answer: Answer: Randomize Read Order In Multigbp Fastq File?
6 months ago by Brian Bushnell 20k
0
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1
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686
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Comment: Comment: trimming primers using iVar
7 months ago by Brian Bushnell 20k
1
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0
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767
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Comment: Comment: Best way to use k-mers as a predictor in my neural network
7 months ago by Brian Bushnell 20k
1
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1
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1.6k
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Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
7 months ago by Brian Bushnell 20k
1
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1
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1.2k
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Comment: Comment: Tools for reference-guided de novo assembly of bacterial genome
7 months ago by Brian Bushnell 20k
1
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2
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2.0k
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Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
7 months ago by Brian Bushnell 20k
1
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1
reply
2.0k
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Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
7 months ago by Brian Bushnell 20k
2
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1
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1.2k
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Answer: Answer: Tools for reference-guided de novo assembly of bacterial genome
7 months ago by Brian Bushnell 20k
3
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1
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634
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Answer: Answer: Exception in thread "main" java.lang.RuntimeException: Sequence and quality leng
7 months ago by Brian Bushnell 20k
1
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1
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1.6k
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Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
7 months ago by Brian Bushnell 20k
2,052 results • Page 2 of 42
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