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1,000 results • Page
2 of 20
Sort: Views
Rank
Views
Votes
Replies
4
votes
9
replies
13k
views
Seqtk subseq: structure of file name.lst
sequence
next-gen
updated 6.1 years ago by
Ram
43k • written 6.1 years ago by
ste.lu
▴ 80
1
vote
2
replies
13k
views
kart file in prefetch
rna-seq
updated 7.5 years ago by
Biostar
20 • written 7.7 years ago by
zh.khodadadi
▴ 20
2
votes
13
replies
12k
views
8 follow
(ERR): bowtie2-align exited with value 1
software error
RNA-Seq
updated 6.3 years ago by
basucsmcri
• 0 • written 7.3 years ago by
biostarsb
▴ 30
2
votes
4
replies
12k
views
Run BLAST on Linux terminal
ncbi
nBLAST
linux
blast
updated 20 months ago by
Ram
43k • written 8.6 years ago by
Abdul Rafay Khan
★ 1.2k
41
votes
55
replies
12k
views
6 follow
hash function for DNA sequences
hash
hashing
DNA
8.1 years ago by
midox
▴ 290
0
votes
1
reply
12k
views
PLINK 1.9 - Converting PED/MAP to BED/BIM/FAM with missing values
plink
updated 7.8 years ago by
Biostar
20 • written 7.8 years ago by
rednalf
▴ 90
3
votes
8
replies
12k
views
6 follow
How do I go from UniProt ID to retrieving the gene name?
sequence
6.5 years ago by
a.rex
▴ 350
3
votes
2
replies
12k
views
ExAC PLI score calculation
DNA-Seq
7.2 years ago by
jonessara770
▴ 240
2
votes
13
replies
12k
views
MarkDuplicates memory issue
alignment
Picard
MarkDuplicates
8.4 years ago by
cacampbell
▴ 60
7
votes
9
replies
12k
views
Different alignment rates for Hisat2 and STAR, Hisat2 has lower alignment rate and STAR have many multi aligned reads
RNA-Seq
updated 6.7 years ago by
Satyajeet Khare
★ 1.6k • written 6.7 years ago by
SMILE
▴ 180
6
votes
7
replies
12k
views
bedtools intersect bed and vcf, coordinates problem
bedtools
bed
vcf
7.1 years ago by
abascalfederico
★ 1.2k
3
votes
4
replies
12k
views
basename: missing operand
snp
4.8 years ago by
evelyn
▴ 230
0
votes
3
replies
12k
views
Extracting Specific Columns from Multiple Files & Writing to File Python
python
file-handeling
8.0 years ago by
BioICoder
▴ 40
3
votes
16
replies
12k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Star
▴ 60
1
vote
2
replies
12k
views
Downloading BAM files GEO/SRA
bam
sra
geo
samtools
sratoolkit
7.8 years ago by
ilobelo
▴ 10
0
votes
4
replies
12k
views
Convert .gbf file to .gbk or .gff
gbk
gff
gbf
updated 16 months ago by
Ram
43k • written 9.0 years ago by
che.bellaj
• 0
4
votes
14
replies
12k
views
All the reads aligned using STAR have low mapping quality (0-3). What is happening?
mapping quality
STAR
BWA
alignment
7.8 years ago by
kirannbishwa01
★ 1.6k
2
votes
3
replies
11k
views
converting maf to vcf
Exome
maf2vcf
updated 16 months ago by
Ram
43k • written 9.0 years ago by
ashishchahl
• 0
3
votes
4
replies
11k
views
Zlib.Error: -3 While Decompressing: Invalid Distance To Far Back (By Using Macs For Chip-Seq Data)
error
12.7 years ago by
Lisanne
• 0
4
votes
7
replies
11k
views
Grab Coordinate Of Centromeres From Ucsc
ucsc
11.0 years ago by
jeansimon32
▴ 170
2
votes
8
replies
11k
views
Loading Custom Genome In Igv Is Not Displaying Genes, Names Match.
igv
gff
reference
contigs
12.3 years ago by
Nickengland
▴ 130
2
votes
4
replies
11k
views
Pymol-Generate Pymol Movie To Mpeg
pymol
updated 2.3 years ago by
Ram
43k • written 12.3 years ago by
Reyhaneh
▴ 530
5
votes
9
replies
11k
views
Error with samtools faidx...Different line length in sequence
samtools
faidx
updated 6.0 years ago by
Biostar
20 • written 6.2 years ago by
oars
▴ 200
4
votes
11
replies
11k
views
Correct way to calculate VAF (Variant allele fraction) from a VCF file
VCF
snp
21 months ago by
prasundutta87
▴ 660
6
votes
3
replies
11k
views
Sequence duplication levels-RNA Seq
RNA-Seq
updated 3.6 years ago by
joshua.theisen
▴ 30 • written 6.1 years ago by
makwana.kd
▴ 50
13
votes
22
replies
11k
views
SVA : Setting up the data from an ExpressionSet and applying sva function to extimate batches
sva
combat
batch-effect
updated 4 weeks ago by
Ram
43k • written 6.9 years ago by
lessismore
★ 1.3k
2
votes
0
replies
11k
views
How to plot UniFrac PCoA with 95% confidence Elipses in R
metagenomics
ordiellipse
vegan
R
phyloseq
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
c.v.oflynn
▴ 100
2
votes
8
replies
11k
views
Plotting different gene ontology categories in a barplot
HI
Gene ontology
R
updated 22 months ago by
zx8754
11k • written 3.3 years ago by
aradhana
• 0
7
votes
8
replies
11k
views
Picard tools duplicate removal
RNA-Seq
picard-tools
6.6 years ago by
blur
▴ 280
3
votes
6
replies
11k
views
6 follow
How to calculate genetic correlation with R
R
updated 2.0 years ago by
ibomsolomon
• 0 • written 10.0 years ago by
Tohamy
▴ 80
2
votes
2
replies
11k
views
How to make clusters in heat map using ggplot2?
RNA-Seq
rna-seq
R
5.1 years ago by
John
▴ 270
5
votes
2
replies
11k
views
Turning Seq objects into strings
sequence
5.2 years ago by
schlogl
▴ 160
3
votes
2
replies
10k
views
BWA-MEM Vs BWA-ALN
next-gen
genome
alignment
8.0 years ago by
SOHAIL
▴ 400
3
votes
1
reply
10k
views
Negative P-Values
gene
genome
next-gen-sequencing
updated 21 months ago by
Ram
43k • written 8.7 years ago by
stevenlang123
▴ 210
0
votes
0
replies
10k
views
pheatmap row annotation and title font size questions
heatmap
pheatmap
updated 16 months ago by
Ram
43k • written 9.0 years ago by
neokao
• 0
11
votes
10
replies
10k
views
Extracting from tophat outputs reads pairs and splice-junctions with a single best match
TOPHAT
RNA-Seq
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
trakhtenberg
▴ 160
2
votes
4
replies
10k
views
num_threads with blastn in blast 2.6.0+
blast
5.4 years ago by
navela78
▴ 70
2
votes
8
replies
10k
views
Size of typical genomic data
genomic
updated 13 months ago by
Ram
43k • written 6.0 years ago by
Nicolas Rosewick
11k
1
vote
7
replies
10k
views
How to find up-regulated and down-regulated genes after GEO2R analysis?
GEO
genes
up-regulated
down-regulated
GEO2R
6.2 years ago by
DanielC
▴ 170
2
votes
1
reply
10k
views
Calculate Linkage Disequilibrium For Snps (Using R^2)
snp
linkage
10.9 years ago by
TitoPullo
▴ 180
7
votes
9
replies
10k
views
Samtools Index Segmentation Fault
samtools
index
10.2 years ago by
Noushin N
▴ 600
1
vote
2
replies
10k
views
Converting MSTRG from stringtie with gene name
RNA-Seq
Stringtie
updated 6.4 years ago by
Biostar
20 • written 6.4 years ago by
fhassanz
▴ 20
3
votes
3
replies
10k
views
bcftools mpileup output format
bcftools
mpileup
5.7 years ago by
tarek.mohamed
▴ 360
3
votes
4
replies
10k
views
Aligning RNA seq data to genome or transcriptome
RNA-Seq
ngs
transcriptome
genome
updated 6.7 years ago by
Ram
43k • written 6.7 years ago by
KVC_bioinfo
▴ 590
0
votes
1
reply
10k
views
Is it normal that nearly all of p-value is equal to 0.1 in PERMANOVA analysis
PERMANOVA
statistics
metagenomics
updated 3.4 years ago by
dqq102829
• 0 • written 4.4 years ago by
zhangdengwei
▴ 210
1
vote
5
replies
10k
views
What Agilent Interval Files (.Bed) Should I Use For Exome Variant Calling With Gatk?
bed
agilent
gatk
updated 4.3 years ago by
Karma
▴ 310 • written 10.5 years ago by
newDNASeqer
▴ 760
0
votes
0
replies
10k
views
Map Between Uniprot Accesion And Gene.Symbol Using R Or/And Mysql
r
bioconductor
mysql
10.4 years ago by
jfertaj
▴ 110
6
votes
8
replies
10k
views
7 follow
Converting SNP names from Illumina GSA array to rsID using PLINK
SNP
plink
6.6 years ago by
dam4l
▴ 200
3
votes
5
replies
10k
views
pheatmap: how to avoid fontface, fontsize, and color from writing over existing rownames
fontsize
rows
color
R
pheatmap
updated 3.0 years ago by
cpad0112
21k • written 3.0 years ago by
ladypurrsia
▴ 60
1
vote
1
reply
10k
views
Raxml bootstrap support values
figtree
raxml
bootstrap
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
JackBel
• 0
1,000 results • Page
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Comment: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from
by
GenoMax
142k
Please accept the answer (green check mark) to provide closure to this thread.
Answer: GATK Structural Variants Pipeline - Steps
by
Pierre Lindenbaum
161k
> A structural variation pipeline for short-read sequencing https://github.com/broadinstitute/gatk-sv
Comment: GATK Structural Variants Pipeline - Steps
by
DGTool
▴ 20
If it is just the tools that they used which you are looking for, the first link in the overview section of that page leads to the followin…
Comment: GO analysis: p-value range
by
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4.6k
It is just a warning that you add a new scale to a ggplot2 plot, that already has an existing one, which will get replaced. Nothing to worr…
Comment: GO analysis: p-value range
by
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▴ 130
If you write me the code you used I can help you more
Comment: GO analysis: p-value range
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▴ 20
When I run the code, the following message appears: Scale for y is already present. Adding another scale for y, which will replace…
Comment: Why most genes have high padj values
by
mnx0723
• 0
In the case of other samples, the total number of genes is at least 3,000 more than that one, but it seems to be a relatively small number.…
Comment: How to hide label in layout file of MCscan (python version)
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jinyi
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Command line is as follows: python -m jcvi.graphics.synteny Cs.Cm.i1.blocks Cs_Cm.bed layout2.txt
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by
marco.barr
▴ 130
Thank you, it seems to be clearer. Your Condition already has two factorial levels. You can replace these names in groups 1 and 2. da…
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by
marco.barr
▴ 130
Hi, I also had the same problem. If you check its github page there have been no releases for many years and these errors cannot be fixed. …
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Thanks, thats really helpful ![enter image description here][1] ![enter image description here][2] [1]: /media/images/0470f3dc-5945-…
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marco.barr
▴ 130
SNPRelate is an R package that is able to read from VCF files directly and perform PCA and IBD/IBS. See the documentation for details in Bi…
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by
ATpoint
82k
788 differential genes is a lot. What is the problem?
Comment: Why most genes have high padj values
by
mnx0723
• 0
Sorry, I made edits.
Comment: Why most genes have high padj values
by
Pierre Lindenbaum
161k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
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