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19 results • Page
1 of 1
Sort: Views
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Views
Votes
Replies
2
votes
9
replies
1.1k
views
HGVS Nomenclature of Multiple Indels found in Cis
Nomenclature
HGVS
22 hours ago by
LauferVA
4.2k
0
votes
4
replies
285
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
rna-seq
15 hours ago by
Bibi
• 0
0
votes
3
replies
263
views
What marks a De-Novo Genome assembly as FAILED?
nanopore
denovo
illumina
assembly
genome
updated 7 hours ago by
nd48
▴ 20 • written 3 days ago by
Umer
▴ 50
0
votes
2
replies
212
views
BiomartException: Query ERROR for existing dataset in BioMart
biomart
ensembl
wheat
python
pybiomart
10 hours ago by
Luqman
• 0
0
votes
4
replies
166
views
GO analysis: p-value range
GO
R
updated 2 hours ago by
Matthias Zepper
4.6k • written 12 hours ago by
sooni
▴ 20
0
votes
4
replies
121
views
Why most genes have high padj values
deg
padj
bulkRNA
3 hours ago by
mnx0723
• 0
0
votes
1
reply
85
views
PCA Visualization error in R - arguments imply differing number of rows
SNPs
PCA
GBS
LINUX
r
updated 4 hours ago by
zx8754
11k • written 9 hours ago by
Ali
• 0
0
votes
0
replies
80
views
handling bio replicates for chromHMM
replicates
chromHMM
19 hours ago by
Hasan_Daaboul
• 0
0
votes
1
reply
75
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
updated 6 hours ago by
ATpoint
82k • written 8 hours ago by
Pegasus
▴ 100
0
votes
1
reply
74
views
Error in using BioSampleParser tool: subscript out of bounds
R
updated 4 hours ago by
marco.barr
▴ 130 • written 11 hours ago by
Mohamed Samir
▴ 20
0
votes
0
replies
70
views
Tool for within-sample ligand-receptor analysis (bulk RNA-seq) ?
cell-cell
communication
ligand-receptor
self-regulation
19 hours ago by
DGTool
▴ 20
0
votes
0
replies
66
views
Challenges of Affymetrix probe IDs for grouping similar genes to calculate their mean
R
Mean
Affymetrix
Probes
Grouping
14 hours ago by
Maryam
• 0
0
votes
0
replies
45
views
transcriptome annotation
annotation
transcriptome
cone
trinity
snails
conus
genome
4 hours ago by
Asim Bin Arshad
• 0
0
votes
1
reply
42
views
GO analysis: Indicate genes corresponding to the pathway
GeneOntoloy
GO
R
updated 10 minutes ago by
marco.barr
▴ 130 • written 2 hours ago by
sooni
▴ 20
0
votes
1
reply
42
views
How to hide label in layout file of MCscan (python version)
MCscan
3 hours ago by
jinyi
• 0
0
votes
0
replies
39
views
How to deal with possibly important predictors omitted during the building of an OLS multivariant linear regression model?
multivariant-linear-regression
confounding
4 hours ago by
JorgeVallejo
▴ 20
0
votes
0
replies
30
views
ENCORI or starBase : ceRNA data retrieval using Web API and curl
ceRNA
ENCORI
curl
microRNA
starBase
4 hours ago by
V_Vibes
• 0
0
votes
0
replies
21
views
Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
Seurat
10X
scRNAseq
read10x
singlecell
2 hours ago by
ev97
▴ 20
0
votes
0
replies
14
views
How to generate an Upset plot in R to plot the shared variants between cell free DNA samples
SharedVariants
Upset
updated 6 minutes ago by
GenoMax
142k • written 16 minutes ago by
sainavyav22
• 0
19 results • Page
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Answer: How do you generate TMM normalized counts using EdgeR?
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Answer: How to find identical sequences in genome fasta file (by Python or any possible
by
GenoMax
142k
> My final purpose are find and remove any identical sequences present in my genome fasta file. You can use `clumpify.sh` from BBMap suite…
Comment: GO analysis: Indicate genes corresponding to the pathway
by
marco.barr
▴ 130
I think you have set a filter to get these pahways upstream from the DEG results. You should extract the IDs or names of the genes that you…
Comment: GATK Structural Variants Pipeline - Steps
by
Bioinformatics_begginner
▴ 20
Thank you for the response, I mean those tools aren't all the steps from fasta to vcf. Would be key understanding the aligner, reference us…
Comment: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from
by
GenoMax
142k
Please accept the answer (green check mark) to provide closure to this thread.
Answer: GATK Structural Variants Pipeline - Steps
by
Pierre Lindenbaum
161k
> A structural variation pipeline for short-read sequencing https://github.com/broadinstitute/gatk-sv
Comment: GATK Structural Variants Pipeline - Steps
by
DGTool
▴ 20
If it is just the tools that they used which you are looking for, the first link in the overview section of that page leads to the followin…
Comment: GO analysis: p-value range
by
Matthias Zepper
4.6k
It is just a warning that you add a new scale to a ggplot2 plot, that already has an existing one, which will get replaced. Nothing to worr…
Comment: GO analysis: p-value range
by
marco.barr
▴ 130
If you write me the code you used I can help you more
Comment: GO analysis: p-value range
by
sooni
▴ 20
When I run the code, the following message appears: Scale for y is already present. Adding another scale for y, which will replace…
Comment: Why most genes have high padj values
by
mnx0723
• 0
In the case of other samples, the total number of genes is at least 3,000 more than that one, but it seems to be a relatively small number.…
Comment: How to hide label in layout file of MCscan (python version)
by
jinyi
• 0
Command line is as follows: python -m jcvi.graphics.synteny Cs.Cm.i1.blocks Cs_Cm.bed layout2.txt
Comment: Add stats to the plot
by
marco.barr
▴ 130
Thank you, it seems to be clearer. Your Condition already has two factorial levels. You can replace these names in groups 1 and 2. da…
Comment: Error in using BioSampleParser tool: subscript out of bounds
by
marco.barr
▴ 130
Hi, I also had the same problem. If you check its github page there have been no releases for many years and these errors cannot be fixed. …
Comment: Add stats to the plot
by
Ghada
• 0
Thanks, thats really helpful ![enter image description here][1] ![enter image description here][2] [1]: /media/images/0470f3dc-5945-…
Comment: PCA Visualization error in R
by
marco.barr
▴ 130
SNPRelate is an R package that is able to read from VCF files directly and perform PCA and IBD/IBS. See the documentation for details in Bi…
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