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Recent Replies
Comment: Add stats to the plot
by
marco.barr
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The error is likely due to the fact that the structure of your data in data4.ts and data2.ts may not contain the Condition values. The grou…
Comment: How to find identical sequences in genome fasta file (by Python or any possible
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Pierre Lindenbaum
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+ https://www.biostars.org/p/3003/
+ https://www.biostars.org/p/9550118/
+ https://www.biostars.org/p/158148/
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I built a web application can directly find repeat unit and repeat times, try it at http://64.64.240.35:8050/.
![Dot plot][1]
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nd48
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I would urge you to consider different approaches for benchmarking before deciding on one. In particular, I found that assembling long read…
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I am using *pybiomart* which has Server inplace of BiomartServer, I used that as per above but still getting the same error. Also, when I a…
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mmseq2 is indeed a good acceleration solution, but its index files require ~ 6 T space....
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Thank you it works
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I think this is what caused the error. we do not have group 1 and 2 in the statistical test results????
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Answer: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
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@atpoint thanks you for your timely response. Can someone else shed light if we can compare the trend of DEGs using the scRNA and Bulk RNA…
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GenoMax
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Please use `101010` to format `code` so it is represented in monospace font. I have done this for you now.
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You may also want to give a try to **FastqWiper** (https://github.com/mazzalab/fastqwiper)
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Ghada
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Thanks. That helpful.
I am getting this error
data4_test <- data4.ts%>% ungroup() %>% t.test(data =.,value ~ Condition)%>%
+ …
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
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ATpoint
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I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
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Bibi
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Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
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> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code
your file doesn't exist, is at the wrong place etc.
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