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19 results • Page
1 of 1
Sort: Votes
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Votes
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2
votes
9
replies
1.1k
views
HGVS Nomenclature of Multiple Indels found in Cis
Nomenclature
HGVS
21 hours ago by
LauferVA
4.2k
0
votes
0
replies
68
views
Tool for within-sample ligand-receptor analysis (bulk RNA-seq) ?
cell-cell
communication
ligand-receptor
self-regulation
18 hours ago by
DGTool
▴ 20
0
votes
0
replies
78
views
handling bio replicates for chromHMM
replicates
chromHMM
18 hours ago by
Hasan_Daaboul
• 0
0
votes
4
replies
281
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
rna-seq
14 hours ago by
Bibi
• 0
0
votes
0
replies
64
views
Challenges of Affymetrix probe IDs for grouping similar genes to calculate their mean
R
Mean
Affymetrix
Probes
Grouping
13 hours ago by
Maryam
• 0
0
votes
2
replies
212
views
BiomartException: Query ERROR for existing dataset in BioMart
biomart
ensembl
wheat
python
pybiomart
9 hours ago by
Luqman
• 0
0
votes
3
replies
260
views
What marks a De-Novo Genome assembly as FAILED?
nanopore
denovo
illumina
assembly
genome
updated 5 hours ago by
nd48
▴ 20 • written 3 days ago by
Umer
▴ 50
0
votes
1
reply
63
views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
identical
sequences.
updated 5 hours ago by
Pierre Lindenbaum
161k • written 5 hours ago by
Sony
▴ 10
0
votes
1
reply
72
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
updated 5 hours ago by
ATpoint
82k • written 7 hours ago by
Pegasus
▴ 100
0
votes
0
replies
42
views
transcriptome annotation
annotation
transcriptome
cone
trinity
snails
conus
genome
3 hours ago by
Asim Bin Arshad
• 0
0
votes
0
replies
32
views
How to deal with possibly important predictors omitted during the building of an OLS multivariant linear regression model?
multivariant-linear-regression
confounding
3 hours ago by
JorgeVallejo
▴ 20
0
votes
1
reply
82
views
PCA Visualization error in R - arguments imply differing number of rows
SNPs
PCA
GBS
LINUX
r
updated 3 hours ago by
zx8754
11k • written 8 hours ago by
Ali
• 0
0
votes
0
replies
27
views
ENCORI or starBase : ceRNA data retrieval using Web API and curl
ceRNA
ENCORI
curl
microRNA
starBase
3 hours ago by
V_Vibes
• 0
0
votes
1
reply
70
views
Error in using BioSampleParser tool: subscript out of bounds
R
updated 3 hours ago by
marco.barr
▴ 130 • written 10 hours ago by
Mohamed Samir
▴ 20
0
votes
1
reply
36
views
How to hide label in layout file of MCscan (python version)
MCscan
2 hours ago by
jinyi
• 0
0
votes
4
replies
112
views
Why most genes have high padj values
deg
padj
bulkRNA
2 hours ago by
mnx0723
• 0
0
votes
0
replies
26
views
GO analysis: Indicate genes corresponding to the pathway
GeneOntoloy
GO
R
2 hours ago by
sooni
▴ 20
0
votes
4
replies
142
views
GO analysis: p-value range
GO
R
updated 1 hour ago by
Matthias Zepper
4.6k • written 11 hours ago by
sooni
▴ 20
0
votes
0
replies
14
views
Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
Seurat
10X
scRNAseq
read10x
singlecell
1 hour ago by
ev97
▴ 20
19 results • Page
1 of 1
Recent Votes
Answer: Q: GenomeScope input and how to interpret the results
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Answer: workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
Sequence alignment on split read event such as inversion, duplication and complex nested events.
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
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▴ 510
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• 0
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Recent Replies
Comment: GATK Structural Variants Pipeline - Steps
by
DGTool
▴ 20
If it is just the tools that they used which you are looking for, the first link in the overview section of that page leads to the followin…
Comment: GO analysis: p-value range
by
Matthias Zepper
4.6k
It is just a warning that you add a new scale to a ggplot2 plot, that already has an existing one, which will get replaced. Nothing to worr…
Comment: GO analysis: p-value range
by
marco.barr
▴ 130
If you write me the code you used I can help you more
Comment: GO analysis: p-value range
by
sooni
▴ 20
When I run the code, the following message appears: Scale for y is already present. Adding another scale for y, which will replace…
Comment: Why most genes have high padj values
by
mnx0723
• 0
In the case of other samples, the total number of genes is at least 3,000 more than that one, but it seems to be a relatively small number.…
Comment: How to hide label in layout file of MCscan (python version)
by
jinyi
• 0
Command line is as follows: python -m jcvi.graphics.synteny Cs.Cm.i1.blocks Cs_Cm.bed layout2.txt
Comment: Add stats to the plot
by
marco.barr
▴ 130
Thank you, it seems to be clearer. Your Condition already has two factorial levels. You can replace these names in groups 1 and 2. da…
Comment: Error in using BioSampleParser tool: subscript out of bounds
by
marco.barr
▴ 130
Hi, I also had the same problem. If you check its github page there have been no releases for many years and these errors cannot be fixed. …
Comment: Add stats to the plot
by
Ghada
• 0
Thanks, thats really helpful ![enter image description here][1] ![enter image description here][2] [1]: /media/images/0470f3dc-5945-…
Comment: PCA Visualization error in R
by
marco.barr
▴ 130
SNPRelate is an R package that is able to read from VCF files directly and perform PCA and IBD/IBS. See the documentation for details in Bi…
Comment: Why most genes have high padj values
by
ATpoint
82k
788 differential genes is a lot. What is the problem?
Comment: Why most genes have high padj values
by
mnx0723
• 0
Sorry, I made edits.
Comment: Why most genes have high padj values
by
Pierre Lindenbaum
161k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Comment: GO analysis: p-value range
by
marco.barr
▴ 130
Try adding: `scale_y_continuous(breaks=seq(0, max_count, by=0.05))`
Comment: Functional enrichment analysis for unique gene IDs
by
ATpoint
82k
If these genes do not have a symbol then it is utterly unlikely that anyone has looked at their function. I would get their Ensembl IDs and…
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