Plot DNA methylation level of DMR on the basis of certain genes

Question

[Srinka]

Is anyone familiar with the process of creating a forest plot to illustrate the relationship between different conditions and DNA methylation levels?

I've compiled a table containing DMRs with annotations, including columns such as

seqnames    start   end width   strand  pvalue  qvalue  meth.diff   annotation  geneChr geneStart   geneEnd geneLength  geneStrand  geneId  distanceToTSS   ENSEMBL SYMBOL  GENENAME    DMR type

I recently came across an article that utilized binary logistic regression to craft a plot akin to the one I've attached here.

If anyone here has expertise in generating such plots or working with binary logistic regression, your valuable insights would be immensely helpful.

Any help will be highly appreciated. Thank you kindly in advance!

[Pierre Lindenbaum]

Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work. If an answer was not really helpful or did not work, provide detailed feedback so others know not to use that answer.

• Unable to install Cluster Profiler through Docker File
• Error in executing nextflow script
• nextflow script of RNA data analysis
• Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count