0
votes
1
reply
13
views
0
votes
2
replies
42
views
25 minutes ago by
Erina
•
0
0
votes
0
replies
8
views
30 minutes ago by
marco.barr
▴
90
0
votes
0
replies
11
views
2
votes
2
replies
74
views
updated 58 minutes ago by
t.montserrat.ayuso
▴
10
•
written 4 hours ago by
carolofharvest
▴
30
7
votes
7
replies
327
views
updated 29 minutes ago by
dsull
★
5.9k
•
written 4 days ago by
carolofharvest
▴
30
0
votes
0
replies
17
views
1 hour ago by
mja
•
0
0
votes
1
reply
42
views
0
votes
0
replies
28
views
1
vote
1
reply
59
views
updated 4 hours ago by
ATpoint
82k
•
written 4 hours ago by
adi.gershon1
•
0
795
votes
167
replies
142k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
3
votes
5
replies
104
views
0
votes
5
replies
211
views
6 follow
updated 5 hours ago by
b.contreras.moreira
▴
180
•
written 23 hours ago by
JH
•
0
0
votes
3
replies
159
views
0
votes
0
replies
45
views
7 hours ago by
Amos Bairoch
▴
120
0
votes
1
reply
73
views
0
votes
0
replies
64
views
0
votes
2
replies
647
views
updated 11 hours ago by
clairechung112
•
0
•
written 23 months ago by
amahdi779
•
0
1
vote
3
replies
161
views
updated 11 hours ago by
Alex Reynolds
35k
•
written 18 hours ago by
SJP
•
0
0
votes
0
replies
60
views
0
votes
1
reply
106
views
1
vote
3
replies
153
views
updated 18 hours ago by
jared.andrews07
★
16k
•
written 21 hours ago by
yvonneh
▴
10
1
vote
2
replies
130
views
3
votes
8
replies
6.5k
views
7 follow
updated 19 hours ago by
Sd
•
0
•
written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
116
views
0
votes
1
reply
140
views
updated 11 hours ago by
Chris Dean
▴
390
•
written 20 hours ago by
sovrappensiero
▴
90
1
vote
2
replies
148
views
2
votes
6
replies
258
views
0
votes
1
reply
464
views
0
votes
1
reply
101
views
updated 19 hours ago by
Mensur Dlakic
★
27k
•
written 22 hours ago by
Arun Sai Kumar
•
0
1
vote
1
reply
120
views
1
vote
1
reply
128
views
updated 23 hours ago by
jared.andrews07
★
16k
•
written 1 day ago by
Oburah
•
0
0
votes
5
replies
182
views
5
votes
5
replies
214
views
updated 1 day ago by
atharvakarkare14
▴
30
•
written 1 day ago by
Begonia_pavonina
▴
150
1
vote
7
replies
380
views
3
votes
3
replies
222
views
0
votes
0
replies
77
views
0
votes
0
replies
82
views
updated 22 hours ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
199
views
0
votes
0
replies
104
views
1
vote
1
reply
122
views
updated 22 hours ago by
Ram
43k
•
written 1 day ago by
marco.barr
▴
90
0
votes
0
replies
74
views
0
votes
0
replies
85
views
9
votes
10
replies
440
views
6 follow
updated 22 hours ago by
Zamin Iqbal
▴
20
•
written 1 day ago by
nicole.kavanagh
•
0
0
votes
1
reply
259
views
updated 1 day ago by
Scooter
▴
280
•
written 7 days ago by
avocado123
•
0
0
votes
0
replies
86
views
0
votes
1
reply
573
views
1
vote
3
replies
199
views
updated 4 hours ago by
barslmn
★
2.1k
•
written 1 day ago by
poordumbsillyidiot
•
0
0
votes
1
reply
190
views
0
votes
0
replies
86
views
Recent Votes
Recent Locations •
All
Belgium, Brussels, 1 minute ago
Cambridge, MA, 1 minute ago
Colombia, 2 minutes ago
Chile, 4 minutes ago
United Kingdom, 4 minutes ago
Berlin, 5 minutes ago
Turkey, 5 minutes ago
Recent Awards •
All
Student to
carolofharvest
▴
30
Commentator to
e.r.zakiev
▴
210
Popular Question to
ManuelDB
▴
80
Popular Question to
rustykb
▴
20
Popular Question to
sativus
▴
20
Recent Replies
Comment: Raw counts using stringtie
by
ahmad.sajad4541
•
0
![stringtie error][1]
[1]: /media/images/6475a009-e1a6-412b-8515-a8aec173
Answer: Differential Expression Analysis using DESeq2 in R
by
Erina
•
0
![The below image contains the code and result also.][1]
[1]: /media/images/96562b96-d508-4f67-96d1-7c71aa17
Comment: High Malat-1 expression in single cell data
by
dsull
★
5.9k
My response above was actually partly inspired off of a reading of your paper :)
Comment: Differential Expression Analysis using DESeq2 in R
by
ATpoint
82k
> everything is showing equal in environment section. But when I am checking for equalities, it’s showing False
No idea what this means. P…
Answer: Analysis of intronic reads included scRNA-seq data
by
t.montserrat.ayuso
▴
10
You can calculate the percentage of intronic reads for each cell using the [DropletQC][1] package for R.
In this preprint we discuss th…
Comment: How does gene length effect the number of reads mapped
by
i.sudbery
19k
I did say almost - obviously things are going to get tricky at gene ends - this is why we have the concept of effective length. Its interst…
Answer: High Malat-1 expression in single cell data
by
t.montserrat.ayuso
▴
10
Malat1 correlates with the intronic content and can be used as a nuclear indicator. In this preprint we discuss about this artifact and the…
Comment: How does gene length effect the number of reads mapped
by
dsull
★
5.9k
I wouldn't say it's true that number of reads is linearly proportional to the length of the gene. That's just an assumption that people mak…
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
by
dthorbur
★
1.9k
Using any of the species present would likely result in a resonable annotation set. You could use *Arabidopsis* since it likely has the mos…
Comment: Downloading older version of a tool
by
GenoMax
142k
Have you tried
conda install <pkg>=<version>
so
conda install smalt=0.5.8
<!-- junk -->
Comment: Generating mpileup file using samtools
by
Joe
21k
Older versions of software are usually available via distribution tools or the websites. It may require a lot of digging, but its almost ce…
Comment: RNA-seq data for deep learning classification
by
Yuju
•
0
Thank you very much for sharing your advice. Yes, it definitely makes sense that with the use of deep learning, models would learn normalis…
Comment: Generating mpileup file using samtools
by
Ruqaiya
•
0
I didn't use the same tool as in the paper...
Comment: read length in structural variant calling
by
eebloom
▴
80
Yes good idea. I guess the quality of the SV calls and as a proxy for quality the length and distribution of variants called might be infor…
Comment: Generating mpileup file using samtools
by
Ruqaiya
•
0
I just realised I didn't align my reads with the tools they used and used bowtie2 instead. I can't download the older version that is menti…
Traffic: 2547 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6