Entering edit mode
8.3 years ago
laurenvw
▴
20
Hi,
I'm trying to run Eigensoft's smartPCA on some data I just converted from vcf files to eigensoft format using PGDSpider. When I try to run it I immediately get back the error "OOPS -i flag not specified at EIG6.0.1/bin/smartpca.perl line 21." I have tried searching online for answers, but I can't seem to find anyone who has had the same error as me. Any guidance would be appreciated!
Lauren
-i
is the genotypes file. What is your full command for smartpca.perl?So I tried a few more things, right now my full command is
I'm no longer getting the
-i flag not specified
error, I'm getting the errors: