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732
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Comment:
Comment: Performance metrics of aligners and variant callers
3.1 years ago by
Devon Ryan
104k
0
votes
1
reply
4.2k
views
Comment:
Comment: Multiqc
3.1 years ago by
Devon Ryan
104k
1
vote
0
replies
2.9k
views
Comment:
Comment: Deeptools, ComputeMatrix and plotProfile
3.1 years ago by
Devon Ryan
104k
0
votes
0
replies
817
views
Comment:
Comment: Does GISAID fasta files contain spike protein or whole genome sequence?
3.1 years ago by
Devon Ryan
104k
0
votes
1
reply
3.8k
views
Comment:
Comment: DESeq2 multi-factor design
3.1 years ago by
Devon Ryan
104k
1
vote
1
reply
2.3k
views
Comment:
Comment: ATAC-Seq: Filter bams for differential analysis or not
3.1 years ago by
Devon Ryan
104k
0
votes
1
reply
868
views
Comment:
Comment: Suggestion for modelling transcriptomics analysis
3.1 years ago by
Devon Ryan
104k
0
votes
0
replies
4.1k
views
Comment:
Comment: Converting beta value to M value (when beta=1)
3.1 years ago by
Devon Ryan
104k
0
votes
1
reply
967
views
Comment:
C: Lmfit function, to analyse differential expressions, not coming from arrays
3.2 years ago by
Devon Ryan
104k
0
votes
1
reply
1.2k
views
Comment:
C: A layman trying to understand what a FASTA file is
3.2 years ago by
Devon Ryan
104k
0
votes
0
replies
7.3k
views
Comment:
C: Remove supplementary alignments from a bam file
3.2 years ago by
Devon Ryan
104k
0
votes
0
replies
7.9k
views
Comment:
C: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
3.2 years ago by
Devon Ryan
104k
0
votes
1
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7.9k
views
Comment:
C: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
3.2 years ago by
Devon Ryan
104k
3
votes
0
replies
4.4k
views
Comment:
C: bamCoverage bin size for narrow and broad histone marks
3.2 years ago by
Devon Ryan
104k
1
vote
0
replies
7.5k
views
Comment:
C: The meaning of differentially expressed (DE) gene level
3.2 years ago by
Devon Ryan
104k
0
votes
0
replies
887
views
Comment:
C: Calculating fold change...CONFUSION
3.3 years ago by
Devon Ryan
104k
2
votes
0
replies
56k
views
Comment:
C: How To Write Data In A Granges Object To A Bed File.
updated 3.3 years ago by
Ram
44k • written 10.4 years ago by
Devon Ryan
104k
1
vote
0
replies
3.1k
views
Comment:
C: What are those black lines in my heatmap?
3.3 years ago by
Devon Ryan
104k
0
votes
0
replies
3.8k
views
Comment:
C: BigWig from ensembl assembly to UCSC session
3.3 years ago by
Devon Ryan
104k
0
votes
1
reply
3.8k
views
Comment:
C: BigWig from ensembl assembly to UCSC session
3.3 years ago by
Devon Ryan
104k
0
votes
0
replies
9.8k
views
Comment:
C: how is obtained the BED score values (the 5th column of the bed files) in BED fi
3.3 years ago by
Devon Ryan
104k
2
votes
1
reply
1.6k
views
Comment:
C: hisat2 alignment error
3.4 years ago by
Devon Ryan
104k
0
votes
1
reply
2.4k
views
Comment:
C: Extracting Methylation Data
3.4 years ago by
Devon Ryan
104k
0
votes
1
reply
1.0k
views
Comment:
C: Is there a stagewise testing procedure for DESeq2?
3.5 years ago by
Devon Ryan
104k
2
votes
2
replies
2.6k
views
Comment:
C: How to count the number of codons in a frame or order using the equation?
3.5 years ago by
Devon Ryan
104k
1
vote
0
replies
2.7k
views
Comment:
C: RNAseq bad PCA, a differential expression analysis killer ?
3.5 years ago by
Devon Ryan
104k
0
votes
1
reply
2.7k
views
Comment:
C: RNAseq bad PCA, a differential expression analysis killer ?
3.5 years ago by
Devon Ryan
104k
2
votes
1
reply
7.5k
views
Comment:
C: Deseq2 with one factor and multiple levels
3.5 years ago by
Devon Ryan
104k
2
votes
1
reply
7.5k
views
Comment:
C: Deseq2 with one factor and multiple levels
3.5 years ago by
Devon Ryan
104k
1
vote
0
replies
4.3k
views
Comment:
C: Doubt on removing duplicates on amplicon sequencing data
3.6 years ago by
Devon Ryan
104k
0
votes
0
replies
4.2k
views
Comment:
C: deepTools computeMatrix need at least one array to concatenate error
3.6 years ago by
Devon Ryan
104k
0
votes
0
replies
5.0k
views
Comment:
C: Samtool (Faidx) - Signal 11 Termination Error
updated 3.6 years ago by
Ram
44k • written 10.8 years ago by
Devon Ryan
104k
0
votes
0
replies
974
views
Comment:
C: Plot a dotted line to the start of the regions in computeMatrix, deepTools
3.6 years ago by
Devon Ryan
104k
0
votes
0
replies
2.3k
views
Comment:
C: Comparing input read subtracted ChIP-read profiles using Deeptools v3.4.3
3.6 years ago by
Devon Ryan
104k
0
votes
1
reply
9.3k
views
Comment:
C: GTF/GFF file for feature count
3.6 years ago by
Devon Ryan
104k
0
votes
0
replies
1.7k
views
Comment:
C: Deeptools correlation plot: between RNAseq and H3K27ac ChIPseq
3.7 years ago by
Devon Ryan
104k
1
vote
1
reply
1.7k
views
Comment:
C: Deeptools correlation plot: between RNAseq and H3K27ac ChIPseq
3.7 years ago by
Devon Ryan
104k
2
votes
0
replies
1.1k
views
Comment:
C: what the mean of Genomic content
3.7 years ago by
Devon Ryan
104k
0
votes
0
replies
2.3k
views
Comment:
C: What statistical test for CpG DMR ?
3.7 years ago by
Devon Ryan
104k
1
vote
0
replies
3.4k
views
Comment:
C: DiffBind - normalization methods with biologically-relevant differences in signa
3.7 years ago by
Devon Ryan
104k
0
votes
0
replies
1.6k
views
Comment:
C: help with segmentation fault deeptools
3.7 years ago by
Devon Ryan
104k
0
votes
1
reply
1.6k
views
Comment:
C: help with segmentation fault deeptools
3.7 years ago by
Devon Ryan
104k
0
votes
0
replies
5.3k
views
Comment:
C: What is difference between bulk RNAseq and mRNAseq?
3.7 years ago by
Devon Ryan
104k
1
vote
0
replies
17k
views
Comment:
C: Benjamini+ Hochberg multiple testing p.adjust R
3.7 years ago by
Devon Ryan
104k
0
votes
0
replies
4.2k
views
Comment:
C: Calculating fold change
3.7 years ago by
Devon Ryan
104k
0
votes
1
reply
5.3k
views
Comment:
C: What is difference between bulk RNAseq and mRNAseq?
3.7 years ago by
Devon Ryan
104k
1
vote
0
replies
2.5k
views
Comment:
C: Samtools merge BAM files using snakemake
3.8 years ago by
Devon Ryan
104k
1
vote
1
reply
2.3k
views
Comment:
C: deepTools NPZ to PCA plot with modifications
3.8 years ago by
Devon Ryan
104k
0
votes
1
reply
2.5k
views
Comment:
C: Samtools merge BAM files using snakemake
3.8 years ago by
Devon Ryan
104k
1
vote
2
replies
2.5k
views
Comment:
C: Samtools merge BAM files using snakemake
3.8 years ago by
Devon Ryan
104k
7,141 results • Page
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