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Answer:
A: Most efficient way to convert Counts to RPKM
3.5 years ago by
h.mon
35k
2
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1
reply
4.9k
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Answer:
A: RNAseq RSEM and featurecounts
3.5 years ago by
h.mon
35k
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1.9k
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Answer:
A: bedtools sort and merge
3.5 years ago by
h.mon
35k
1
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1
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1.7k
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Answer:
A: Tools for hard trimming?
3.5 years ago by
h.mon
35k
1
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1
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4.2k
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Answer:
A: How to install Bioperl on Ubuntu 18.x
3.5 years ago by
h.mon
35k
3
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1
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4.8k
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Answer:
A: BWA mem skip orientation RF/RR as there are not enough pairs
3.6 years ago by
h.mon
35k
0
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1
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2.0k
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Answer:
A: Why did my bowtie option (--no-unal) not present in the help?
3.6 years ago by
h.mon
35k
0
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1
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1.5k
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Answer:
A: I have questions about importing fastq data from ENA to qiime2
3.6 years ago by
h.mon
35k
1
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0
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1.1k
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Answer:
A: How to have the count of reads mapping each transcript of a fasta file ?
3.6 years ago by
h.mon
35k
1
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1
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1.6k
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Answer:
A: Questions about the Getting-started of wtdbg2
3.6 years ago by
h.mon
35k
3
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2
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1.8k
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Answer:
C: FDR for multiple contrasts
3.6 years ago by
h.mon
35k
2
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0
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970
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Answer:
A: How to distinguish selection vs population demography from Tajima's D test
3.6 years ago by
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35k
2
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0
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813
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Answer:
A: SAM file annotation
3.6 years ago by
h.mon
35k
0
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0
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474
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Answer:
C: which expression levels should I choose in microarray?
3.6 years ago by
h.mon
35k
0
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1
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2.0k
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Answer:
A: Blastdbcmd (Windows) - Too Many Positional Arguments
3.6 years ago by
h.mon
35k
0
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0
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673
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Answer:
A: To Translate transcriptome
3.6 years ago by
h.mon
35k
1
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0
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801
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Answer:
A: Error installing MITE-Hunter
3.6 years ago by
h.mon
35k
1
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1
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1.6k
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Answer:
A: Use PCoA plot rather than phylogenetic tree?
3.6 years ago by
h.mon
35k
0
votes
1
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610
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Answer:
A: Program to plot 60,000 16S rRNA dataset for phylogenetic assessment?
3.6 years ago by
h.mon
35k
2
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1
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3.2k
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Answer:
A: I have aligned reads and gene counts from STAR. How should I calculate TPM from
3.6 years ago by
h.mon
35k
0
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1
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859
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Answer:
A: Try to find a tool for creating a pipeline with PBS scripts?
3.6 years ago by
h.mon
35k
1
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0
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1.4k
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Answer:
C: Count number of Genes in GFF3 file (Prokka output)
3.6 years ago by
h.mon
35k
1
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0
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637
views
Answer:
A: Assembling Short Sequence
3.6 years ago by
h.mon
35k
0
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0
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1.7k
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Answer:
A: featureCounts returning counts of 0 for all gene_id
3.6 years ago by
h.mon
35k
1
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1
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7.8k
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Answer:
A: Using featureCounts on paired-end reads aligned with HISAT2 resulting in 0 assig
3.7 years ago by
h.mon
35k
4
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1
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1.4k
views
Answer:
A: Losing most PE reads using Cutadapt on 150bp PE metagenomes
3.7 years ago by
h.mon
35k
1
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1
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2.3k
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Answer:
A: De novo transcriptome from PE reads with high multi-mapping rate (Bowtie2)
3.7 years ago by
h.mon
35k
0
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1
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1.5k
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Answer:
A: Using GNU Parallel to read arguments into a bash script
3.7 years ago by
h.mon
35k
7
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4.8k
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Answer:
A: [RNA-Seq] STAR vs Subread
3.7 years ago by
h.mon
35k
0
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0
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1.6k
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Answer:
A: IPA (Improved Phased Assembly) output questions
3.7 years ago by
h.mon
35k
0
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1
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3.1k
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Answer:
C: Normality test for rna seq data
3.7 years ago by
h.mon
35k
3
votes
1
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1.6k
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Answer:
A: rnaQUAST-2.1.0/BUSCO, blast-2.10.0 multithreading problem?
3.7 years ago by
h.mon
35k
6
votes
2
replies
4.5k
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Answer:
A: How to run STAR with multiple files
3.7 years ago by
h.mon
35k
3
votes
0
replies
1.2k
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Answer:
A: How to deal with high duplication rate in FASTQC ( de novo transcriptom assembly
3.7 years ago by
h.mon
35k
3
votes
1
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2.0k
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Answer:
C: Aligning thousands of genomes with Mugsy
3.7 years ago by
h.mon
35k
4
votes
1
reply
1.9k
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Answer:
A: Metagenomic Data management
3.8 years ago by
h.mon
35k
2
votes
1
reply
912
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Answer:
A: Ensembl reference genomes and annotations by chromosome only.
3.8 years ago by
h.mon
35k
0
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1
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1.9k
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Answer:
A: BWA aligning forward and reverse differently
3.8 years ago by
h.mon
35k
6
votes
0
replies
3.3k
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Answer:
A: Why does bioinformatics use a special format like a BAM file instead of a databa
3.8 years ago by
h.mon
35k
2
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0
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1.3k
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Answer:
A: Displaying the KEGG pathway image in R notebook
3.8 years ago by
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35k
0
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0
replies
931
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Answer:
A: trying to set up bigSCale_seems cannot load in R 3.6.1, 3.6.3 or 4.02
3.8 years ago by
h.mon
35k
3
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1
reply
1.1k
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Answer:
A: Hmmer scan eror
3.8 years ago by
h.mon
35k
0
votes
0
replies
3.0k
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Answer:
A: a5 Miseq pipeline error
3.8 years ago by
h.mon
35k
3
votes
0
replies
4.7k
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Answer:
A: BLAST masks repetitive sequences - but where: database or query sequence or both
3.8 years ago by
h.mon
35k
0
votes
1
reply
2.1k
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Answer:
C: Concatenation and Gzip Compression of Beagle Files Slow
3.8 years ago by
h.mon
35k
0
votes
0
replies
1.8k
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Answer:
A: Error in RGI-CARD database
3.8 years ago by
h.mon
35k
1
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0
replies
2.1k
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Answer:
A: file and directory management best practices
3.8 years ago by
h.mon
35k
0
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0
replies
1.1k
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Answer:
A: Error related to DESeq2 package
3.8 years ago by
h.mon
35k
2
votes
1
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905
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Answer:
A: What does "assembly-level" classification mean?
3.8 years ago by
h.mon
35k
0
votes
0
replies
3.7k
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Answer:
A: How to remove gaps from sequence alignment?
3.8 years ago by
h.mon
35k
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