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5
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1
reply
1.4k
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Answer:
A: Interpretation of RNA seq pipeline in a paper
4.5 years ago by
shawn.w.foley
★ 1.3k
4
votes
1
reply
7.8k
views
Answer:
A: GSEA: Does a gene set really have positive and negative enrichment scores?
4.6 years ago by
shawn.w.foley
★ 1.3k
0
votes
0
replies
1.9k
views
Answer:
A: How to count total small RNAs (known and novel) in my aligned reads?
4.7 years ago by
shawn.w.foley
★ 1.3k
1
vote
2
replies
5.8k
views
Answer:
A: How to create ggplot for each dataframe in list and export them?
4.7 years ago by
shawn.w.foley
★ 1.3k
1
vote
0
replies
2.9k
views
Answer:
A: Question: Calculating each gene's mean of intron length
4.7 years ago by
shawn.w.foley
★ 1.3k
3
votes
1
reply
966
views
Answer:
A: How to sort numbers in two columns in Ascending Order
4.7 years ago by
shawn.w.foley
★ 1.3k
4
votes
1
reply
1.5k
views
Answer:
A: count and generate count files for multiple bam files
4.7 years ago by
shawn.w.foley
★ 1.3k
2
votes
0
replies
1.2k
views
Answer:
A: RNA-Seq Differential gene expression
4.7 years ago by
shawn.w.foley
★ 1.3k
3
votes
1
reply
2.1k
views
Answer:
A: Error with HTseq RNAseq read count
4.7 years ago by
shawn.w.foley
★ 1.3k
3
votes
1
reply
3.2k
views
Answer:
A: Volcano plot: Using Multiple results
4.8 years ago by
shawn.w.foley
★ 1.3k
2
votes
3
replies
1.6k
views
Answer:
A: error in duplicate row.names in getting gene symbols
4.8 years ago by
shawn.w.foley
★ 1.3k
2
votes
1
reply
4.0k
views
Answer:
A: nperm value in GSEA setting
4.9 years ago by
shawn.w.foley
★ 1.3k
2
votes
0
replies
3.2k
views
Answer:
A: MACS2 result of FDR
4.9 years ago by
shawn.w.foley
★ 1.3k
1
vote
2
replies
1.2k
views
Answer:
A: SNPs from RNA-Seq Compare with SNPs from DNA-Seq
4.9 years ago by
shawn.w.foley
★ 1.3k
3
votes
0
replies
1.3k
views
Answer:
A: DESeq2 results versus by eye comparison in IGV
4.9 years ago by
shawn.w.foley
★ 1.3k
4
votes
2
replies
855
views
Answer:
A: issue with ifelse statement
4.9 years ago by
shawn.w.foley
★ 1.3k
2
votes
2
replies
1.6k
views
Answer:
A: Can I convert from PSI to RPKM?
4.9 years ago by
shawn.w.foley
★ 1.3k
3
votes
1
reply
958
views
Answer:
A: Extract and retain only chromosome info in GWAS sumstats file
5.0 years ago by
shawn.w.foley
★ 1.3k
0
votes
1
reply
812
views
Answer:
A: Can detection of SNP from DNA (Intronic part) and mRNA (Exonic Part) make some
5.0 years ago by
shawn.w.foley
★ 1.3k
1
vote
2
replies
7.2k
views
Answer:
A: How to group gene dataset and run t.test for each row for every gene in R?
5.0 years ago by
shawn.w.foley
★ 1.3k
0
votes
1
reply
3.6k
views
Answer:
A: CCLE miRNA expression data
5.0 years ago by
shawn.w.foley
★ 1.3k
0
votes
1
reply
2.9k
views
Answer:
A: Should I keep all HTSeq table informations for edgeR analysis?
5.0 years ago by
shawn.w.foley
★ 1.3k
0
votes
0
replies
1.2k
views
Answer:
A: Variants in Exon or Intron
5.0 years ago by
shawn.w.foley
★ 1.3k
1
vote
0
replies
1.5k
views
Answer:
A: Tool to perform GSEA on mapped genes
5.0 years ago by
shawn.w.foley
★ 1.3k
0
votes
0
replies
1.8k
views
Answer:
A: Estimate percentage of alternative splicing
5.0 years ago by
shawn.w.foley
★ 1.3k
3
votes
2
replies
2.1k
views
Answer:
A: Question about differentially expressed genes selection for low sample size data
5.0 years ago by
shawn.w.foley
★ 1.3k
4
votes
1
reply
821
views
Answer:
A: Trouble manipulating dataset
5.0 years ago by
shawn.w.foley
★ 1.3k
0
votes
1
reply
1.2k
views
Answer:
A: Something strange in RNA-seq raw reads, It is contamination or not?
5.0 years ago by
shawn.w.foley
★ 1.3k
1
vote
1
reply
4.5k
views
Answer:
A: Fold change cut off enrichment analysis
5.1 years ago by
shawn.w.foley
★ 1.3k
0
votes
1
reply
2.1k
views
Answer:
A: Multiple testing correction issue
5.1 years ago by
shawn.w.foley
★ 1.3k
2
votes
0
replies
2.0k
views
Answer:
A: RNA-Seq Analysis with DEXSeq
5.1 years ago by
shawn.w.foley
★ 1.3k
3
votes
0
replies
1.1k
views
Answer:
A: RIP-seq identifing reverse complement reads between smallRNA and targeted mRNA
5.1 years ago by
shawn.w.foley
★ 1.3k
0
votes
0
replies
1.5k
views
Answer:
A: Statistics on differentially expressed genes
5.1 years ago by
shawn.w.foley
★ 1.3k
2
votes
0
replies
1.0k
views
Answer:
A: Writing scripts for a single vs all chromosomes
5.2 years ago by
shawn.w.foley
★ 1.3k
2
votes
1
reply
2.0k
views
Answer:
C: Post PCA analysis
5.2 years ago by
shawn.w.foley
★ 1.3k
2
votes
0
replies
2.4k
views
Answer:
A: Transcription factor binding sites using ATAC-seq peaks
5.2 years ago by
shawn.w.foley
★ 1.3k
2
votes
1
reply
2.2k
views
Answer:
A: CLIP-seq peak analysis
5.2 years ago by
shawn.w.foley
★ 1.3k
1
vote
1
reply
3.0k
views
Answer:
C: Too low FPKM values from StringTie
5.2 years ago by
shawn.w.foley
★ 1.3k
0
votes
1
reply
1.2k
views
Answer:
A: Unequally pooling libraries for RNAseq?
5.2 years ago by
shawn.w.foley
★ 1.3k
0
votes
2
replies
3.8k
views
Answer:
A: Get -400bp to +50bp sequence of gene from gff3 file
5.3 years ago by
shawn.w.foley
★ 1.3k
0
votes
0
replies
1.2k
views
Answer:
A: Finding deferentially active regions with DESeq2
5.4 years ago by
shawn.w.foley
★ 1.3k
1
vote
0
replies
1.9k
views
Answer:
A: Venn diagram generation criteria from RNAseq data
5.4 years ago by
shawn.w.foley
★ 1.3k
2
votes
1
reply
1.3k
views
Answer:
A: Extract rows from file two having the 4th column ( which contain /1 /2 signs ) i
5.5 years ago by
shawn.w.foley
★ 1.3k
2
votes
2
replies
11k
views
Answer:
A: GSEA, input metrics
5.7 years ago by
shawn.w.foley
★ 1.3k
1
vote
0
replies
2.4k
views
Answer:
A: How do strand specific sequencing protocols work?
6.3 years ago by
shawn.w.foley
★ 1.3k
4
votes
1
reply
5.2k
views
Answer:
A: Replicates for RNA-seq from 1 cell lines undergoing different treatments
6.3 years ago by
shawn.w.foley
★ 1.3k
1
vote
0
replies
1.8k
views
Answer:
A: How do I extract normalized signal values for Affy SNP 6.0 chip using oligo or c
6.4 years ago by
shawn.w.foley
★ 1.3k
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