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5
votes
2
replies
1.2k
views
How to subset DESeq2 results
DESEq2
GSEA
updated 4.0 years ago by
igor
13k • written 4.0 years ago by
ATCG
▴ 380
0
votes
0
replies
1.9k
views
Comment:
C: Gene set enrichment analysis input data
4.0 years ago by
ATCG
▴ 380
2
votes
4
replies
1.9k
views
Gene set enrichment analysis input data
GSE
DESeq2
4.0 years ago by
ATCG
▴ 380
1
vote
1
reply
1.1k
views
Infer strandedness of my single-end RNA-Seq data
RNA-Seq
HISAT2
strandedness
updated 4.0 years ago by
Kristoffer Vitting-Seerup
★ 4.0k • written 4.0 years ago by
ATCG
▴ 380
0
votes
0
replies
14k
views
Comment:
C: Which strand specific option need to be used with HISAT2?
4.0 years ago by
ATCG
▴ 380
0
votes
0
replies
2.4k
views
Comment:
C: File conversion in bash, discrepancy in number of lines after conversion.
4.0 years ago by
ATCG
▴ 380
0
votes
1
reply
2.4k
views
Comment:
C: File conversion in bash, discrepancy in number of lines after conversion.
4.0 years ago by
ATCG
▴ 380
0
votes
0
replies
2.4k
views
Comment:
C: File conversion in bash, discrepancy in number of lines after conversion.
4.0 years ago by
ATCG
▴ 380
0
votes
0
replies
2.4k
views
Comment:
C: File conversion in bash, discrepancy in number of lines after conversion.
4.0 years ago by
ATCG
▴ 380
0
votes
1
reply
2.4k
views
Comment:
C: File conversion in bash, discrepancy in number of lines after conversion.
4.0 years ago by
ATCG
▴ 380
0
votes
1
reply
2.4k
views
Comment:
C: File conversion in bash, discrepancy in number of lines after conversion.
4.0 years ago by
ATCG
▴ 380
17
votes
26
replies
2.4k
views
File conversion in bash, discrepancy in number of lines after conversion.
bash
updated 13 months ago by
Ram
43k • written 4.0 years ago by
ATCG
▴ 380
0
votes
3
replies
2.4k
views
Comment:
C: file conversion in bash
4.0 years ago by
ATCG
▴ 380
0
votes
2
replies
2.4k
views
Comment:
C: file conversion in bash
4.0 years ago by
ATCG
▴ 380
0
votes
1
reply
2.4k
views
Comment:
C: file conversion in bash
4.0 years ago by
ATCG
▴ 380
0
votes
1
reply
2.4k
views
Comment:
C: file conversion in bash
4.0 years ago by
ATCG
▴ 380
1
vote
0
replies
3.2k
views
Comment:
C: ReactomePA enrichPathway function
4.0 years ago by
ATCG
▴ 380
0
votes
1
reply
142k
views
Answer:
A: The Biostar Handbook. A bioinformatics e-book for beginners.
4.0 years ago by
ATCG
▴ 380
0
votes
2
replies
3.2k
views
Comment:
C: ReactomePA enrichPathway function
4.0 years ago by
ATCG
▴ 380
0
votes
1
reply
5.0k
views
Comment:
C: Selecting the background for GO enrichment analysis (proteomics)
4.0 years ago by
ATCG
▴ 380
0
votes
1
reply
5.0k
views
Comment:
C: Selecting the background for GO enrichment analysis (proteomics)
4.0 years ago by
ATCG
▴ 380
0
votes
0
replies
25k
views
Comment:
C: Selection Of Background Gene Set In Enrichment Analysis
4.0 years ago by
ATCG
▴ 380
1
vote
6
replies
887
views
Filter fastq files
Fastq
trimmomatic
updated 4.0 years ago by
Istvan Albert
100k • written 4.0 years ago by
ATCG
▴ 380
0
votes
0
replies
887
views
Comment:
C: Filter fastq files
4.0 years ago by
ATCG
▴ 380
0
votes
0
replies
1.2k
views
Comment:
A: over-represented is not removed after trimmomatic
4.0 years ago by
ATCG
▴ 380
0
votes
2
replies
1.2k
views
over-represented is not removed after trimmomatic
trimmomatic
fastqc
4.0 years ago by
ATCG
▴ 380
2
votes
2
replies
934
views
Is indexing a genome the same as annotating a genome?
samtools
index
genome indexing
4.0 years ago by
ATCG
▴ 380
0
votes
0
replies
5.4k
views
Comment:
C: DESeq2 Error: package or namespace load failed for 'DESeq2'
4.0 years ago by
ATCG
▴ 380
2
votes
4
replies
5.4k
views
DESeq2 Error: package or namespace load failed for 'DESeq2'
RNA-Seq
DESeq2
image not found
updated 4.0 years ago by
karl.stamm
4.1k • written 4.0 years ago by
ATCG
▴ 380
0
votes
1
reply
1.5k
views
Comment:
C: Drosophila reference genomes
4.0 years ago by
ATCG
▴ 380
0
votes
1
reply
920
views
Comment:
C: How to recognize single-end fastq files
4.0 years ago by
ATCG
▴ 380
2
votes
2
replies
3.9k
views
Do illumina instruments generate four fastq files per sample?
Fasq
Illumina
lane
updated 4.0 years ago by
GenoMax
142k • written 4.0 years ago by
ATCG
▴ 380
2
votes
4
replies
920
views
How to recognize single-end fastq files
RNA-Seq
Fastq
single-end
updated 4.0 years ago by
GenoMax
142k • written 4.1 years ago by
ATCG
▴ 380
0
votes
0
replies
1.5k
views
Comment:
C: Pathway vs Network
4.1 years ago by
ATCG
▴ 380
5
votes
2
replies
1.5k
views
Pathway vs Network
Pathway
Networks
RNA-Seq
updated 4.1 years ago by
i.sudbery
19k • written 4.1 years ago by
ATCG
▴ 380
0
votes
0
replies
1.5k
views
Comment:
C: Drosophila reference genomes
4.1 years ago by
ATCG
▴ 380
0
votes
2
replies
1.5k
views
Comment:
C: Drosophila reference genomes
4.1 years ago by
ATCG
▴ 380
8
votes
8
replies
1.5k
views
Drosophila reference genomes
genome
Drosophila
Model organisms
Annotation
updated 4.1 years ago by
GenoMax
142k • written 4.1 years ago by
ATCG
▴ 380
0
votes
2
replies
4.3k
views
Download NCBI GEO dataset
RNA-Seq
GEO
GSE
updated 4.1 years ago by
wm
▴ 560 • written 4.1 years ago by
ATCG
▴ 380
0
votes
0
replies
8.8k
views
Comment:
C: Remove Blacklist regions from ChIP-seq Data
updated 4.6 years ago by
Ram
43k • written 7.8 years ago by
ATCG
▴ 380
0
votes
3
replies
1.1k
views
Extracting related sequences from a FASTA file
Sequence comparizon
Data mining
kmer
updated 5.3 years ago by
Biostar
20 • written 5.4 years ago by
ATCG
▴ 380
1
vote
3
replies
3.9k
views
Filter out related individuals from a vcf file using Plink or Hail
Hail
Plink
VCF
updated 5.4 years ago by
zx8754
11k • written 6.5 years ago by
ATCG
▴ 380
4
votes
6
replies
2.3k
views
Bulk primer design
primers
bulk
FASTA
kmer
updated 5.4 years ago by
Pierre Lindenbaum
161k • written 5.4 years ago by
ATCG
▴ 380
0
votes
1
reply
1.2k
views
Comment:
C: where to keep scripts for new software
5.6 years ago by
ATCG
▴ 380
1
vote
4
replies
1.2k
views
where to keep scripts for new software
$PATH
Unix
install
5.6 years ago by
ATCG
▴ 380
4
votes
0
replies
180k
views
Answer:
A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
updated 5.6 years ago by
zx8754
11k • written 6.6 years ago by
ATCG
▴ 380
0
votes
0
replies
1.3k
views
Comment:
C: Pacbio inversion visualization and IGV
5.6 years ago by
ATCG
▴ 380
4
votes
3
replies
2.6k
views
GMAP download page
RNA-Seq
GMAP
PacBio
5.6 years ago by
ATCG
▴ 380
0
votes
1
reply
2.6k
views
Comment:
C: GMAP download page
5.6 years ago by
ATCG
▴ 380
5
votes
8
replies
2.8k
views
differential gene expression analysis
confounders
RNA-Seq
Limma
EdgeR
Regression
6.0 years ago by
ATCG
▴ 380
167 results • Page
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