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1
vote
3
replies
219
views
Filter BAM to keep only alignments at an interval, ignoring reads spliced over
samtools bam splicing
3 days ago by WouterDeCoster 47k
2
votes
4
replies
509
views
Find reference fasta based on M5/MD5 string
reference fasta
3 months ago by WouterDeCoster 47k
0
votes
0
replies
266
views
Number of reads per gene in pseudobulk with more or fewer nuclei
nuclei 10x sequencing
8 months ago by WouterDeCoster 47k
1
vote
5
replies
1.3k
views
bcftools stats: definition of indel type
vcf bcftools
23 months ago by WouterDeCoster 47k
4
votes
2
replies
1.2k
views
Use bcftools to find carriers of variants
vcf bcftools
updated 2.2 years ago by 161k • written 2.2 years ago by 47k
4
votes
4
replies
1.3k
views
Where to get consensus sequences of human transposable elements
database transposons reference
updated 3.0 years ago by 5.3k • written 3.1 years ago by 47k
0
votes
1
reply
723
views
Assemble and get consensus of inserted sequence
assembly structural variant nanopore
3.9 years ago by WouterDeCoster 47k
5
votes
4
replies
3.0k
views
searching tool for calculating switch/phase error rate
phasing vcf variants whatshap
updated 4.9 years ago by ▴ 100 • written 5.1 years ago by 47k
23
votes
11
replies
4.9k
views
7 follow
Code golf: detecting homopolymers of length N in the (human) genome
code golf fasta homopolymer repeat
updated 10 days ago by 43k • written 5.0 years ago by 47k
5
votes
4
replies
1.6k
views
Infer order of supplementary alignments [pysam]
pysam alignment
updated 5.0 years ago by ▴ 760 • written 5.0 years ago by 47k
17
votes
16
replies
5.4k
views
6 follow
Tool to fix reference allele nucleotide in vcf
vcf fasta pony
updated 5.5 years ago by 16k • written 5.5 years ago by 47k
3
votes
3
replies
2.9k
views
dbSNP Batch Query service will be discontinued June 2018: alternatives?
dbsnp
updated 6.1 years ago by 14k • written 6.1 years ago by 47k
4
votes
2
replies
2.1k
views
No XIST in Emsembl cdna.fa
ensembl
updated 6.7 years ago by ★ 1.6k • written 6.7 years ago by 47k
17
votes
18
replies
11k
views
Getting edit distance from sam tags MD & NM: conceptual misunderstanding?
sam edit distance
updated 7.0 years ago by 5.7k • written 7.0 years ago by 47k
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