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0
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0
replies
15k
views
Comment:
C: Illumina paired-end reads R1 and R2 mixed together?
4.5 years ago by
harold.smith.tarheel
★ 4.9k
5
votes
0
replies
9.8k
views
Comment:
C: Do bioinformaticians often break molecular biologists' hearts by being the first
updated 4.5 years ago by
Ram
44k • written 8.5 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
1
reply
6.3k
views
Comment:
C: Can Q10 be better than Q30
updated 4.5 years ago by
Ram
44k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
6.5k
views
Comment:
C: How to confirm forward primer matches each read without removing primer sequence
updated 4.5 years ago by
Ram
44k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
6.5k
views
Comment:
C: How to confirm forward primer matches each read without removing primer sequence
updated 4.5 years ago by
Ram
44k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
3.0k
views
Answer:
A: bcl to fastq Conversion
updated 4.5 years ago by
Ram
44k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
3.0k
views
Comment:
C: bcl to fastq Conversion
updated 4.5 years ago by
Ram
44k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
4.6k
views
Comment:
C: Bcl to fastq Conversion Problem
updated 4.5 years ago by
Ram
44k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
0
replies
3.0k
views
Answer:
A: Per base sequence quality before and after truseq adapters removal
updated 4.5 years ago by
Ram
44k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
2
replies
4.0k
views
Answer:
A: Database for C. elegans TFBS
updated 4.5 years ago by
Ram
44k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
4
votes
0
replies
5.6k
views
Comment:
C: Thrown Into A Bioinformatics Position
updated 4.5 years ago by
Ram
44k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
4
votes
1
reply
1.8k
views
Answer:
A: Interpreting bbduk histogram headers and contents
4.5 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
9.8k
views
Comment:
C: Finding the iIllumina index read from raw fastq file
updated 4.5 years ago by
Ram
44k • written 8.6 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
2
replies
3.9k
views
Answer:
A: Extract sequences based on keywords in headers (no perl or python code)
updated 4.5 years ago by
Ram
44k • written 8.7 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
1
reply
1.1k
views
Answer:
A: The same location shares different GeneBank Accession in IGV and UCSC?
4.5 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
1.4k
views
Comment:
C: Comparing calls from different VCFs
4.6 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
1
reply
5.1k
views
Answer:
A: Why are there many reads with green color in IGV of RNA-seq data?
4.9 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
2.1k
views
Answer:
A: targets in a bed at or above a coverage
4.9 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
4.6k
views
Comment:
C: NGS Data storage solutions for small organisations or big labs
5.0 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
2
replies
4.6k
views
Answer:
A: NGS Data storage solutions for small organisations or big labs
5.0 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
2.6k
views
Answer:
A: Keeping only common variants in the merged VCF file
5.0 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
3.5k
views
Comment:
C: Trimmomatic Error : java.lang.ArrayIndexOutOfBoundsException: 1
5.2 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
1.3k
views
Comment:
C: Efficent Estimation of Sequencing Coverage
5.3 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
1.3k
views
Answer:
A: Efficent Estimation of Sequencing Coverage
5.3 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
1
reply
7.6k
views
Answer:
A: bcftools doesn't normalize the vcf file
5.3 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
1.0k
views
Answer:
A: Viral vector integration site detection tool
5.4 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
1.3k
views
Comment:
C: Missing sequence from a cosmid de novo assembly
5.4 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
4.1k
views
Comment:
C: Explaining fragment distribution plots from ATAC-seq
5.4 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
3.0k
views
Comment:
C: BBDuk.sh and BBDuk2.sh barcodefilter does not filter the reads
5.4 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
1.3k
views
Answer:
A: Missing sequence from a cosmid de novo assembly
5.5 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
4.5k
views
Comment:
C: Low percentage of Illumina reads retained after trimming with Trimmomatic
5.5 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
1.3k
views
Answer:
A: Find unique non overlapping intervals between two files?
5.6 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
3.6k
views
Answer:
A: Combining snp and indel vcf files with GATK4
5.6 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
2.2k
views
Comment:
C: Why do RNA-seq reads not map against clones?
updated 5.7 years ago by
Ram
44k • written 8.2 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
1
reply
3.5k
views
Comment:
C: how to extract unique variants from GVCF
5.8 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
3.5k
views
Comment:
C: how to extract unique variants from GVCF
5.8 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
3.5k
views
Comment:
C: how to extract unique variants from GVCF
5.8 years ago by
harold.smith.tarheel
★ 4.9k
8
votes
8
replies
3.5k
views
how to extract unique variants from GVCF
GATK variant-calling
GVCF
filtering
updated 2.1 years ago by
Rashedul Islam
▴ 470 • written 5.8 years ago by
harold.smith.tarheel
★ 4.9k
5
votes
0
replies
18k
views
Answer:
A: why PCA for RNA-Seq but tSNE for scRNA-seq?
6.0 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
4.6k
views
Answer:
A: Error in samtools view
6.2 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
2.2k
views
Answer:
A: What cigar to use to count reads with last base mismatch in Rsamtools?
6.2 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
2.1k
views
Comment:
C: How do we find the number of sequences with terminal mismatches?
6.2 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
2.1k
views
Comment:
C: How do we find the number of sequences with terminal mismatches?
6.2 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
2.1k
views
Comment:
C: How do we find the number of sequences with terminal mismatches?
6.2 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
2.1k
views
Answer:
A: How do we find the number of sequences with terminal mismatches?
6.2 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
2.7k
views
Comment:
C: look for sequences containing a specific motif
6.3 years ago by
harold.smith.tarheel
★ 4.9k
5
votes
1
reply
2.7k
views
Answer:
A: look for sequences containing a specific motif
6.3 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
1.9k
views
Answer:
A: Gene distribution along the chromosomes
6.3 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
3.8k
views
Answer:
A: A very short gene with very high TPM
6.3 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
4.5k
views
Answer:
A: vcf files: counting number of variants in genomic windows of chosen size
6.4 years ago by
harold.smith.tarheel
★ 4.9k
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