Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,770 results • Page
3 of 2336
Sort: Votes
Rank
Views
Votes
Replies
117
votes
66
replies
46k
views
20 follow
Tutorial:
[Deprecated] Fast download of FASTQ files from the European Nucleotide Archive (ENA)
aspera
fastq-dump
Fastq
ENA
updated 13 months ago by
Ram
43k • written 5.8 years ago by
ATpoint
82k
117
votes
59
replies
33k
views
23 follow
Help a graduate student going into Bioinformatics looking for a new personal laptop. Should I get a Mac or a PC?
hardware
next-gen
updated 15 months ago by
Ram
43k • written 9.0 years ago by
Angelo Victoria
▴ 30
116
votes
25
replies
70k
views
14 follow
Is My Bam File Sorted ?
bam
next-gen
sequencing
sort
updated 15 months ago by
Miguel
▴ 20 • written 13.3 years ago by
Pierre Lindenbaum
161k
116
votes
35
replies
8.2k
views
18 follow
Forum:
Is Biostar Killing The Bioinformatics Core?
core
biostars
updated 14 months ago by
Ram
43k • written 11.1 years ago by
Jeremy Leipzig
22k
115
votes
21
replies
113k
views
14 follow
When To Choose Python Over Perl (And Vice Versa)?
python
perl
comparison
updated 12.1 years ago by
Aditya Joshi
▴ 30 • written 12.5 years ago by
Niek De Klein
★ 2.6k
114
votes
7
replies
28k
views
7 follow
What Makes One Probability Distribution Better For Rna-Seq Than Another?
rna
updated 13.2 years ago by
Stan Letovsky
▴ 140 • written 13.2 years ago by
Jeremy Leipzig
22k
113
votes
53
replies
7.2k
views
16 follow
Forum:
Middle author, but not first author projects. How would you approach this?
authorship
career-development
updated 11 months ago by
Ram
43k • written 5.1 years ago by
pet.bioinformatician
▴ 170
112
votes
24
replies
47k
views
17 follow
Workflow Or Tutorial For Snp Calling?
snp
samtools
alignment
next-gen
sequencing
updated 20 months ago by
Ram
43k • written 13.0 years ago by
Matthieu
▴ 480
112
votes
56
replies
44k
views
23 follow
Gene Fusion Detection: Rna-Seq Data
rna-seq
next-gen
sequencing
fusion
updated 19 months ago by
Ram
43k • written 11.9 years ago by
KS
▴ 380
110
votes
37
replies
8.5k
views
13 follow
Bioinformatics Career Survey 2011/2012
career
updated 14 months ago by
Ram
43k • written 12.6 years ago by
Pierre Lindenbaum
161k
108
votes
45
replies
86k
views
30 follow
How To Extract A Sequence From A Big (6Gb) Multifasta File ?
fasta
updated 20 months ago by
aswinssoman
▴ 70 • written 11.8 years ago by
Mchimich
▴ 320
107
votes
27
replies
27k
views
12 follow
Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis]
python
next-gen
updated 2.3 years ago by
Ram
43k • written 12.1 years ago by
Sukhi Singh
11k
106
votes
12
replies
80k
views
7 follow
Bedtools Compare Multiple Bed Files?
bedtools
intersect
updated 18 months ago by
Ram
43k • written 12.5 years ago by
Bioscientist
★ 1.7k
106
votes
6
replies
26k
views
6 follow
Tutorial:
Creating workflows with snakemake and conda
workflow
snakemake
conda
updated 13 months ago by
Ram
43k • written 5.7 years ago by
finswimmer
16k
106
votes
27
replies
15k
views
14 follow
Is There Such A Thing As A Ucsc Api?
ucsc
python
comparative
api
updated 2.9 years ago by
Maximilian Haeussler
★ 1.6k • written 13.5 years ago by
Steve Moss
2.3k
106
votes
23
replies
22k
views
16 follow
Forum:
How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics
updated 14 months ago by
Ram
43k • written 10.3 years ago by
epigene
▴ 590
105
votes
26
replies
43k
views
23 follow
How To Create Mutation Diagram In R Or In Any Tools?
mutation
domain
r
updated 7 months ago by
zx8754
11k • written 11.3 years ago by
henryvuong
▴ 810
105
votes
81
replies
32k
views
17 follow
Duplicates on Illumina
duplicates
illumina
updated 20 months ago by
GenoMax
142k • written 7.3 years ago by
predeus
★ 2.0k
105
votes
46
replies
13k
views
13 follow
Forum:
Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 14 months ago by
Ram
43k • written 10.7 years ago by
ugly.betty77
★ 1.1k
105
votes
21
replies
21k
views
19 follow
Why Should I Use Galaxy ?
galaxy
workflow
7.0 years ago by
Pierre Lindenbaum
161k
105
votes
72
replies
18k
views
17 follow
Digesting Fasta Sequences Into A Set Of Smaller Sequences
code
fasta
sequence
codegolf
updated 5.6 years ago by
zx8754
11k • written 13.8 years ago by
Eric Normandeau
11k
105
votes
31
replies
95k
views
18 follow
Best Way To Merge A Many Thousand Small Bam Files Into One Big Bam File?
bam
picard
samtools
merge
updated 4 months ago by
mmfansler
▴ 450 • written 12.8 years ago by
2184687-1231-83-
★ 5.1k
105
votes
15
replies
112k
views
16 follow
Convertion Of Gff3 To Gtf
gtf
gff
updated 6 weeks ago by
xiaoleiusc
▴ 140 • written 11.9 years ago by
GouthamAtla
12k
103
votes
20
replies
30k
views
16 follow
What Wetlab Techniques Does A Bioinformatician Need To Be Able To Perform, If Any?
education
meta
updated 13.1 years ago by
Pablo Pareja
★ 1.6k • written 13.1 years ago by
Andra Waagmeester
3.2k
103
votes
42
replies
31k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 27 days ago by
Jeremy Leipzig
22k • written 10.5 years ago by
14134125465346445
★ 3.6k
103
votes
27
replies
89k
views
21 follow
Extract Sub-Set Of Regions From Vcf File
vcf
tabix
genome
filter
updated 11 months ago by
NIRJHAR
• 0 • written 11.9 years ago by
Rubal7
▴ 830
103
votes
34
replies
114k
views
23 follow
How To Split A Bam File By Chromosome
bam
updated 3 months ago by
Ram
43k • written 11.9 years ago by
GPR
▴ 390
102
votes
44
replies
9.1k
views
22 follow
What Are Numbers Every Bioinformatician Should Know?
knowledge
career
updated 14 months ago by
Ram
43k • written 10.7 years ago by
brentp
24k
102
votes
30
replies
62k
views
25 follow
Tools To Find Gene Ontology Term Enrichment
gene
enrichment
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Biostar User
★ 1.0k
102
votes
19
replies
18k
views
15 follow
How Does A Bioinformatics Scientist Document His/Her Work?
workflow
updated 14 months ago by
Ram
43k • written 11.9 years ago by
Anjan
▴ 830
101
votes
6
replies
63k
views
6 follow
Insert Size And Fragment Size ?
2.5 years ago by
Nicolas Rosewick
11k
100
votes
12
replies
37k
views
14 follow
Best Software For Detection Of Somatic Mutations From Matched Tumor:Normal Ngs Data
somatic-mutation
variant-calling
SNV
updated 2.6 years ago by
Ram
43k • written 12.1 years ago by
Travis
★ 2.8k
100
votes
9
replies
127k
views
11 follow
How To Merge Two Fastq.Gz Files?
merge
fastq
updated 2.0 years ago by
henry-keen
▴ 40 • written 10.6 years ago by
newDNASeqer
▴ 760
100
votes
16
replies
78k
views
15 follow
How Much Coverage Do We Need For An Rna-Seq Experiment?
rna-seq
coverage
9.4 years ago by
Obi Griffith
20k
99
votes
106
replies
46k
views
26 follow
Tutorial:
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000genomes
PLINK
PCA
updated 27 days ago by
psb7
▴ 20 • written 5.7 years ago by
Kevin Blighe
87k
99
votes
8
replies
29k
views
8 follow
Tutorial:
Guide to TCGA data
cancer
RNA-Seq
clinical
TCGA
updated 13 months ago by
Ram
43k • written 8.2 years ago by
Jordan Anaya
★ 1.1k
99
votes
16
replies
34k
views
18 follow
Tutorial:
Heatmaps in R
heatmap
R
updated 13 months ago by
Ram
43k • written 7.8 years ago by
Jean-Karim Heriche
27k
99
votes
44
replies
24k
views
33 follow
Best Free Text Editor For All Popular Languages (R, Python, Perl Etc..)
text
r
perl
python
updated 6.7 years ago by
grant.hovhannisyan
★ 2.6k • written 12.2 years ago by
John
★ 1.5k
99
votes
24
replies
17k
views
16 follow
Workflow management software for pipeline development in NGS
pipeline
workflow
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
michaelberinski
▴ 310
99
votes
21
replies
9.0k
views
14 follow
Forum:
How Has Bioinformatics Improved Over Time?
bioinformatics
updated 14 months ago by
Ram
43k • written 11.3 years ago by
Kate
▴ 370
98
votes
39
replies
158k
views
19 follow
Extract Reads From A Bam File That Fall Within A Given Region
bam
updated 12 months ago by
Dan
▴ 180 • written 11.8 years ago by
abi
▴ 390
98
votes
41
replies
6.2k
views
17 follow
Forum:
I am really pissed off by the bioinformatics software world. Do/can we have a better solution?
software-error
next-gen-sequencing
updated 13 months ago by
Ram
43k • written 7.7 years ago by
moxu
▴ 510
98
votes
12
replies
53k
views
6 follow
Ensembl-Ids Vs. Entrez-Ids
ensembl
entrez
gene
updated 3.1 years ago by
hagenaue
▴ 10 • written 12.3 years ago by
Untom
▴ 420
97
votes
35
replies
26k
views
16 follow
Disease Associated Snps
snp
gwas
database
updated 10.3 years ago by
vaibhav
• 0 • written 13.9 years ago by
pixie@bioinfo
★ 1.5k
97
votes
23
replies
33k
views
15 follow
Is Tophat The Only Mapper To Consider For Rna-Seq Data?
bwa
tophat
rna-seq
updated 23 months ago by
Ram
43k • written 11.3 years ago by
Lisa
▴ 330
97
votes
19
replies
94k
views
12 follow
How To Get The Sequence Of A Genomic Region From Ucsc?
ucsc
fasta
sequence
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Giovanni M Dall'Olio
28k
97
votes
26
replies
11k
views
15 follow
Do You Trust Bio-Xxx Projects ?
biopython
bioperl
biojava
subjective
updated 13.3 years ago by
Lars Juhl Jensen
11k • written 13.3 years ago by
toni
★ 2.2k
96
votes
26
replies
31k
views
15 follow
What Methods Do You Use For In/Del/Snp Calling?
short-read-aligner
snp
sequencing
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Pierre Lindenbaum
161k
95
votes
25
replies
33k
views
11 follow
Tutorial:
Fastq Quality Control Shootout
quality
qc
trimming
fastq
updated 14 months ago by
Ram
43k • written 11.6 years ago by
Istvan Albert
100k
95
votes
6
replies
37k
views
In Sam Format, Clarify The Meaning Of The "0" Flag.
sam
updated 13.1 years ago by
Jts
★ 1.4k • written 13.1 years ago by
tflutre
▴ 580
116,770 results • Page
3 of 2336
Recent Votes
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
Answer: Association study using SNP data
.lgen file has 3+ different alleles
Force PLINK2 to neglect chrX as the sex chromosome
Answer: Force PLINK2 to neglect chrX as the sex chromosome
LD-prune variants while maintaining a list of SNPs
Recent Locations •
All
Italy,
2 minutes ago
Germany,
4 minutes ago
France,
4 minutes ago
Italy,
5 minutes ago
Norway,
6 minutes ago
France,
7 minutes ago
Sweden,
9 minutes ago
Recent Awards •
All
Popular Question
to
njornet
▴ 20
Supporter
to
simplitia
▴ 130
Scholar
to
Pierre Lindenbaum
161k
Commentator
to
andres.firrincieli
3.6k
Popular Question
to
qudrat.nii
▴ 10
Popular Question
to
arctic
▴ 40
Popular Question
to
iamsmor
• 0
Recent Replies
Comment: install.packages("imudata") - package ‘imudata’ is not available for this versio
by
snajafy
• 0
I am facing the same problem and I don't know how to solve the problem,....
Comment: install.packages("imudata")
by
zx8754
11k
[How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning?](https://stackoverflow.com/q/25721884/680068)
Answer: install.packages("imudata")
by
ATpoint
82k
Welcome to this community. Please learn the most important lesson right away which is reading answers and learning from it. Users gave you …
Comment: install.packages("imudata")
by
marco.barr
▴ 90
You can install from github directly. Many R packages are not present in the CRAN repository or in Bioconductor( from Biocmanager). Also re…
Comment: install package
by
snajafy
• 0
Hi, Thanks for your answer, I do it, but I get this error: ERROR: compilation failed for package 'gmwm' removing 'C:/Users/najafi/AppData/…
Comment: Quetion regarding WGCNA
by
andres.firrincieli
3.6k
There is something wrong with your data but without any context I can't really answer to your question. I would like to see a PCA plot of …
Comment: error to run rnammer
by
antonio.spl
• 0
please could you tell me what was the solution, I am having the same problem, I only get empty files.
Comment: install package
by
snajafy
• 0
Hi, Thanks for your answer, I do it, but I get this error: ERROR: compilation failed for package 'gmwm' * removing 'C:/Users/najafi/AppData…
Answer: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
by
swbarnes2
14k
Any chance the numerical columns were imported as factors?
Comment: ERROR When Using Ensembl Plants Biomart Wget API
by
Dora
▴ 10
Thank you very much, that works perfectly :) ! Maybe someone needs to use a plant dataset as an example (instead of human dataset ) in the …
Comment: Truncated Bam Error
by
guanghao
• 0
I also have this problem, but it doesn't work even I remove the Xms32g. The result bam is still malformed.
Answer: DMRcate ranges liftover hg19 to hg38
by
aaron.stevens
• 0
Hey, I believe they are mapped to hg19 and this is potentially a bigger problem than people realise, I nearly made this mistake and I would…
Comment: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
by
brandon
• 0
This worked beautifully using 'requests.get()' in python, thank you so much!
Answer: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
by
Pierre Lindenbaum
161k
first get the main ID in stringdb: $ wget -qO - "https://string-db.org/api/tsv-no-header/get_string_ids?identifiers=RPS4Y1&species=960…
Comment: Help with DGEList function
by
marco.barr
▴ 90
Are you sure you've loaded the library properly? Have you checked if edgeR is ticked in the list of installed packages? Double-check it. If…
Traffic: 2138 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6