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117,036 results • Page
3 of 2341
Sort: Rank
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Votes
Replies
0
votes
1
reply
143
views
Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation
vcf
vep
zygosity
deepvariant
5 days ago by
asalimih
▴ 60
0
votes
0
replies
114
views
Is it okay to assemble my 12 metatranscriptome samples with Trinity separately?
trinity
metatranscriptome
5 days ago by
jway
• 0
2
votes
2
replies
194
views
Cannot install bwa-mem2 via conda
conda
mamba
python
updated 4 days ago by
Ram
43k • written 5 days ago by
jsmith120f
• 0
2
votes
2
replies
208
views
genome finishing
finishing
genome
updated 5 days ago by
nd48
▴ 20 • written 5 days ago by
trezini
• 0
1
vote
5
replies
231
views
Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
circos
atacseq
updated 5 days ago by
Pierre Lindenbaum
161k • written 5 days ago by
biology_inform
▴ 50
1
vote
4
replies
300
views
Add stats to boxplot in R
stats
R
5 days ago by
Ghada
• 0
0
votes
1
reply
159
views
Seurat v5 and how to correctly integrate across multiple experiments
Seurat
scRNA
R
updated 4 days ago by
Papyrus
★ 2.9k • written 5 days ago by
yura.grabovska
▴ 90
0
votes
1
reply
155
views
Difference in number of reads when using duplex and simplex base calling with Dorado
base
calling
nanopore
simplex
dorado
duplex
updated 4 days ago by
GenoMax
142k • written 5 days ago by
Lélé
▴ 10
0
votes
5
replies
312
views
calculating genomic coverage/ base overlap in R
genomics
updated 2 days ago by
1769mkc
★ 1.2k • written 5 days ago by
Xbox_27
• 0
1
vote
5
replies
275
views
Annotating file using bcftools
annotation
plink
bcftools
4 days ago by
kl
▴ 10
0
votes
9
replies
373
views
Duplicated reads (IDs) from nanopore sequencing
bam
nanopore
sequencing
4 days ago by
njornet
▴ 20
0
votes
3
replies
177
views
Problem with Calling Variants from RNA-Seq data
vcf
gatk
benchmark
giab
rna-seq
5 days ago by
Esraa
• 0
3
votes
3
replies
238
views
Getting differential ChIP-seq peaks between conditions after calling consensus peaks
MAnorm
ChIP-seq
consensus
peaks
updated 4 days ago by
ATpoint
82k • written 5 days ago by
Alexandra
• 0
3
votes
1
reply
332
views
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
limma
updated 5 days ago by
dariober
14k • written 6 days ago by
Holly
▴ 30
1
vote
4
replies
301
views
Filtering VCF files based on VAF giving incorrect results
bcftools
GATK
Bioinformatics
picard
VCF
5 days ago by
Arton
▴ 10
0
votes
0
replies
99
views
ReactomeGSA
ReactomeGSA
5 days ago by
Shaimaa Gamal
▴ 10
0
votes
0
replies
88
views
News:
New course: Manipulation of NGS Data for Genomic and Population Genetics Analyses
KeepLearning
TScourses
5 days ago by
Transmitting Science communication
▴ 70
0
votes
5
replies
292
views
bbmerge (bbmap) ~ error with insert size file output
bbtools
bbmerge
bbmap
updated 4 days ago by
GenoMax
142k • written 5 days ago by
chrisk
• 0
0
votes
1
reply
179
views
perseus software (version 1.5.5)
preseus
mass
spectrometry
data
updated 4 days ago by
DGTool
▴ 20 • written 5 days ago by
iqra
• 0
0
votes
0
replies
100
views
Why the shape of RCS is contradictory to the p value for nonlinearity.
RCS
ggplot2
ggplot
R
updated 5 days ago by
GenoMax
142k • written 5 days ago by
Dude
• 0
0
votes
0
replies
99
views
NEURON, Brian2, NEST, or PyNN
NEST
NEURON
PyNN
Brian2
5 days ago by
brunofelicianodeomena
• 0
1
vote
2
replies
216
views
Alphafold 3 pLDDT coloring scheme in chimerax?
ChimeraX
Alphaphold
Alphaphold3
updated 5 days ago by
colindaven
6.4k • written 5 days ago by
mbrav005
• 0
0
votes
1
reply
153
views
Polish a large genome with Pilon
Pilon
Pacbio
Polish
Illumina
5 days ago by
sansan_96
▴ 90
1
vote
2
replies
238
views
Doubt about the process of annotation, detection, identification and classification of transposable elements
annotation
TransposableElements
5 days ago by
MarcosCosta
• 0
2
votes
2
replies
210
views
Genome Visualization Tools
bacterial
genome
updated 6 days ago by
GenoMax
142k • written 6 days ago by
dlera.lozano
▴ 10
2
votes
3
replies
224
views
RSeQC : infer_experiment.py Error: Could not retrieve index file
RSeQC
RNA-Seq
updated 6 days ago by
Ram
43k • written 6 days ago by
Prawesh
• 0
1
vote
3
replies
300
views
Using ggplotly in R
ggplot
ggplotly
updated 5 days ago by
jared.andrews07
★ 16k • written 6 days ago by
jen
▴ 10
1
vote
2
replies
238
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart
RNAseq
kallisto
4 days ago by
bioinfo
▴ 150
0
votes
3
replies
272
views
RNAseq RNA content
mRNA
Linux
rRNA
RNA-seq
RNA
updated 6 days ago by
noodle
▴ 580 • written 6 days ago by
doramora
▴ 10
0
votes
1
reply
150
views
Post-imputation QC for input into GWAS analyses
gwas
prs
updated 6 days ago by
LauferVA
4.2k • written 6 days ago by
graeme.thorn
▴ 100
0
votes
2
replies
201
views
Using Cutadapt to trim adapters from paired-end small RNA sequence data
trimming
adapters
cutadapt
sRNA-seq
smallRNA
5 days ago by
melissa.joubert
• 0
4
votes
1
reply
214
views
Extracting only 4-fold degenerate sites from gene sequences/alignments?
alignments
6 days ago by
J.
▴ 40
0
votes
0
replies
115
views
Is there a real ground truth for CNV data?
CNV
6 days ago by
jennyp0706
• 0
0
votes
3
replies
225
views
Biomart issue, why so few 3'utrs?
utr
biomart
updated 6 days ago by
GenoMax
142k • written 6 days ago by
RNAseqer
▴ 270
1
vote
1
reply
151
views
sci-RNA-seq
Seurat
sci-RNA-seq
updated 6 days ago by
Ram
43k • written 6 days ago by
kilcdincer
▴ 10
4
votes
4
replies
3.0k
views
CNVkit for somatic copy number detection
cnv
cnvkit
exome
WES
updated 6 days ago by
Anitha
• 0 • written 5.1 years ago by
stephaniem
• 0
1
vote
8
replies
477
views
Overlapping Ranges within Granges object
Genomicranges
IRanges
GRanges
updated 2 days ago by
Alex Reynolds
35k • written 6 days ago by
ntsopoul
▴ 60
0
votes
3
replies
216
views
How to access GWAVA software of data
GWAVA
updated 6 days ago by
GenoMax
142k • written 6 days ago by
nonaddldy
▴ 10
0
votes
2
replies
234
views
Inquiry about deseq2 transformation
RNA-seq
deseq2
4 days ago by
Chen
• 0
1
vote
1
reply
179
views
The total expressed genes in RNA-Seq data
RNA-SEQ
updated 6 days ago by
ATpoint
82k • written 6 days ago by
Pegasus
▴ 100
0
votes
1
reply
137
views
What is the bin size for Bamcompare?
chip-seq
deeptools
bamcompare
updated 6 days ago by
Ram
43k • written 6 days ago by
Emily
▴ 20
1
vote
3
replies
286
views
Is there any way to modify this pie chart ?
pie
ggplot
R
chart
updated 4 days ago by
GenoMax
142k • written 6 days ago by
ohtang7
▴ 40
0
votes
0
replies
98
views
In what situations is 'outer' typically used when using anndata.concat()?
concat
anndata
scanpy
6 days ago by
Spring
• 0
0
votes
2
replies
193
views
Is it necessary to do genotype quality filteration after snp calling with GATK
snp
filteration
genotype
quality
GATK
6 days ago by
IdaHao0921
• 0
0
votes
3
replies
359
views
Snakemake wrapper issue
fastqc
snakemake
updated 6 days ago by
Wei-Chen Pan
• 0 • written 10 weeks ago by
Matvii Mykhailichenko
• 0
2
votes
5
replies
291
views
What does the 'E%' represent in BUSCO results?
BUSCO
updated 6 days ago by
Philipp Bayer
8.5k • written 6 days ago by
林明德
• 0
0
votes
4
replies
2.3k
views
MGLTools does not work in windows 11
windows-11
Autodock
windows
MGLTools
updated 6 days ago by
Ram
43k • written 13 months ago by
mohyeddine.taleb
• 0
2
votes
4
replies
240
views
Help with IGV abbreviation
igv
updated 6 days ago by
Ram
43k • written 6 days ago by
GeneC
• 0
0
votes
1
reply
166
views
How to process Bulk WES data?
WES
WGS
updated 7 days ago by
GenoMax
142k • written 7 days ago by
wyuan37
• 0
0
votes
1
reply
164
views
Can diamond prepdb be used to make a taxonomically aware database?
blast
diamond
taxonomy
updated 6 days ago by
GenoMax
142k • written 7 days ago by
cedric.blais
• 0
117,036 results • Page
3 of 2341
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Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
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The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
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Please do a few simple Google searches before asking others for help.
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Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
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Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
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This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
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It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
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• 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
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