updated 11 days ago by
DavidStreid
▴
90
•
written 6.4 years ago by
madhu.9124
▴
60
4
votes
5
replies
3.4k
views
4
votes
7
replies
616
views
4
votes
5
replies
4.4k
views
updated 2 days ago by
dario.garvan
▴
520
•
written 7.2 years ago by
d-cameron
★
2.9k
4
votes
6
replies
812
views
7 follow
updated 22 days ago by
dsull
★
6.0k
•
written 26 days ago by
qudrat.nii
▴
10
4
votes
9
replies
2.1k
views
20 days ago by
anna
▴
20
4
votes
5
replies
460
views
4
votes
6
replies
1.2k
views
4
votes
8
replies
774
views
4
votes
4
replies
3.0k
views
4
votes
0
replies
163
views
4
votes
2
replies
289
views
14 days ago by
lorena9132
▴
10
4
votes
9
replies
2.2k
views
6 follow
4
votes
1
reply
269
views
4
votes
11
replies
898
views
4
votes
3
replies
445
views
updated 22 days ago by
Arup Ghosh
3.2k
•
written 23 days ago by
chaco001
▴
40
4
votes
7
replies
432
views
5 days ago by
Chen
•
0
4
votes
15
replies
1.7k
views
updated 15 days ago by
Gordon Smyth
★
7.2k
•
written 5 months ago by
raplayer
▴
10
4
votes
6
replies
3.8k
views
4
votes
9
replies
469
views
4
votes
1
reply
360
views
4
votes
1
reply
208
views
5 days ago by
J.
▴
40
4
votes
7
replies
639
views
20 days ago by
e.r.zakiev
▴
210
4
votes
2
replies
278
views
3
votes
4
replies
327
views
3
votes
3
replies
234
views
3
votes
7
replies
422
views
3
votes
4
replies
488
views
updated 12 days ago by
Gordon Smyth
★
7.2k
•
written 15 days ago by
SHN
▴
40
3
votes
1
reply
209
views
3
votes
4
replies
424
views
24 days ago by
QX
•
0
3
votes
4
replies
4.0k
views
updated 11 days ago by
chloek88
•
0
•
written 5.6 years ago by
Philipp Bayer
8.5k
3
votes
4
replies
762
views
3
votes
3
replies
374
views
3
votes
3
replies
385
views
3
votes
2
replies
201
views
updated 6 days ago by
ATpoint
82k
•
written 6 days ago by
jennyp0706
•
0
3
votes
1
reply
329
views
3
votes
1
reply
286
views
3
votes
5
replies
647
views
3
votes
2
replies
427
views
3
votes
8
replies
636
views
3
votes
3
replies
373
views
3
votes
0
replies
1.1k
views
14 days ago by
Ibrahim Tanyalcin
★
1.2k
3
votes
3
replies
443
views
3
votes
3
replies
298
views
3
votes
4
replies
331
views
3
votes
5
replies
412
views
3
votes
3
replies
288
views
3
votes
8
replies
723
views
updated 13 days ago by
Chris Dean
▴
410
•
written 17 days ago by
sovrappensiero
▴
100
3
votes
3
replies
2.5k
views
3
votes
5
replies
352
views
3
votes
6
replies
524
views
Recent Votes
Recent Locations •
All
Turkey, 3 minutes ago
Germany, 4 minutes ago
Canada, 4 minutes ago
United States, 10 minutes ago
Russia, 15 minutes ago
India, 15 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 18 minutes ago
Recent Awards •
All
Scholar to
Pierre Lindenbaum
161k
Popular Question to
carlopecoraro2
★
2.5k
Popular Question to
scideas
▴
30
Popular Question to
Muhammad
•
0
Popular Question to
synat.keam
▴
100
Recent Replies
Comment: Add stats to the plot
by
GenoMax
142k
Please use `101010` to format `code` so it is represented in monospace font. I have done this for you now.
Answer: is there a tool to recover corrupted fastq files
by
Tommaso
•
0
You may also want to give a try to **FastqWiper** (https://github.com/mazzalab/fastqwiper)
Comment: Add stats to the plot
by
Ghada
•
0
Thanks. That helpful.
I am getting this error
data4_test <- data4.ts%>% ungroup() %>% t.test(data =.,value ~ Condition)%>%
+ …
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
ATpoint
82k
I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
Bibi
•
0
Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code
your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
•
0
Hi Pierre,
I am attempting to run this code and am running into this error:
(jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
ATpoint
82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim()
by
ATpoint
82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Comment: What marks a De-Novo Genome assembly as FAILED?
by
Umer
▴
50
Yes. We are sequencing 45 different samples with illumina.
12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
Comment: HGVS Nomenclature of Multiple Indels found in Cis
by
LauferVA
4.2k
how has this code progressed? is it publically available? would you want to work together?
Comment: Design for complex RNA-Seq experiment using Deseq2
by
Ezequiel
•
0
I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
Comment: Add stats to the plot
by
marco.barr
▴
130
Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from
by
ATpoint
82k
Use everything before the whitespace in list.txt, for example `A00869:294:HCW57DSXY:2:1101:3929:1000` and not `A00869:294:HCW57DSXY:2:1101:…
Answer: CellRanger output more cells than specified using --force-cells? Why?
by
scideas
▴
30
I actually had this same issue with CellRanger v7- turns out that since you have 2 species in your mapping reference, CellRanger is forcing…
Traffic: 1208 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6