Limit : all time
all time today this week this month this year
116,999 results • Page 2 of 2340
Sort: replies
Rank Views Votes Replies
179
votes
51
replies
17k
views
26 follow
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen sequencing galaxy
updated 10.8 years ago by ▴ 600 • written 13.5 years ago by 161k
26
votes
50
replies
14k
views
8 follow
Tool: Retrieve a subset of FASTA from large Illumina multi-FASTA file
fasta multi-fasta illumina
updated 10 months ago by 43k • written 8.0 years ago by ▴ 50
27
votes
50
replies
18k
views
7 follow
Extract fasta sequences from a large file using a list of names
fasta
updated 15 months ago by 43k • written 9.0 years ago by ▴ 620
188
votes
50
replies
74k
views
41 follow
How To Remove The Same Sequences In The Fasta Files?
fasta sequence duplicates
updated 19 months ago by 43k • written 13.6 years ago by ▴ 340
12
votes
50
replies
4.2k
views
How can I find out the Linux version and what is the ftp command to install R and R Studio on Linux server?
R
7.2 years ago by thomas.f.hahn2 ▴ 100
94
votes
50
replies
53k
views
16 follow
PCA plot from read count matrix from RNA-Seq
RNA-Seq pca
updated 2.5 years ago by ▴ 20 • written 6.5 years ago by ▴ 220
22
votes
50
replies
17k
views
Why I can not install anything on R?
R software error
5.6 years ago by Za ▴ 140
93
votes
50
replies
16k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics 23andMe
updated 14 months ago by 43k • written 10.5 years ago by 100k
85
votes
49
replies
10k
views
31 follow
Which Application Is Truly Missing In Bioinformatics?
subjective general
updated 6 months ago by 43k • written 14.2 years ago by 3.4k
262
votes
48
replies
23k
views
37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 14 months ago by ★ 1.0k • written 9.0 years ago by ★ 4.2k
72
votes
48
replies
8.6k
views
18 follow
What Kind Of Bioinformatics Tutorials Would You Like To See Online?
education
updated 15 months ago by 43k • written 13.1 years ago by 13k
72
votes
48
replies
18k
views
15 follow
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment bwa
updated 14 months ago by 43k • written 11.3 years ago by 33k
131
votes
48
replies
16k
views
19 follow
Justifying Learning Linux For Bioinformatics
linux subjective
updated 12.8 years ago by ★ 2.6k • written 12.8 years ago by 11k
39
votes
48
replies
7.1k
views
CUTADAPT in windows
sequencing
updated 15 months ago by 43k • written 9.0 years ago by ★ 4.3k
90
votes
48
replies
34k
views
29 follow
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm rna-seq bioconductor
updated 6 months ago by 43k • written 10.6 years ago by ★ 7.8k
68
votes
48
replies
8.9k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2
updated 12 months ago by 43k • written 6.8 years ago by 100k
188
votes
47
replies
2.9k
views
16 follow
Job: Bioinformatics freelancers needed
freelancer
updated 13 months ago by 43k • written 8.1 years ago by ▴ 190
22
votes
47
replies
5.3k
views
(solved) I couldn't reproduce the problem of max_target_seqs
blast
updated 5.1 years ago by ★ 2.2k • written 5.6 years ago by ▴ 510
18
votes
47
replies
4.7k
views
Fastq Trimmer by pattern
fastq trimming reads terminal
7.3 years ago by dzisis1986 ▴ 70
23
votes
47
replies
7.2k
views
6 follow
Dbsnp Individual Genotyping Information For Specific Snps
dbsnp
updated 13.1 years ago by 18k • written 13.1 years ago by ★ 2.8k
126
votes
46
replies
50k
views
21 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization ChIP-Seq homer ngsplot deeptools
updated 13 months ago by 43k • written 8.2 years ago by ★ 3.2k
105
votes
46
replies
13k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 14 months ago by 43k • written 10.7 years ago by ★ 1.1k
83
votes
46
replies
9.2k
views
15 follow
Tool: ChatGPT optimized for bioinformatics questions
gpt
updated 9 weeks ago by 4.2k • written 11 months ago by ▴ 840
92
votes
46
replies
12k
views
28 follow
Best Language For Introductory Programming Course From Within An Introduction Course On Bioinformatics.
programming subjective
updated 15 months ago by 43k • written 12.9 years ago by 3.2k
37
votes
46
replies
7.0k
views
12 follow
Quick Programming Challenge: How Do I Calculate Reference Coverage From A Table Of Alignment Starts And Ends?
code alignment programming
updated 5.7 years ago by 43k • written 14.1 years ago by 22k
176
votes
46
replies
19k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
6 months ago by Istvan Albert 100k
43
votes
46
replies
4.3k
views
taking sequences of a list of miRNAs
miRNA mirbase sequence gene
updated 7.6 years ago by 43k • written 7.6 years ago by ★ 4.3k
108
votes
45
replies
87k
views
30 follow
How To Extract A Sequence From A Big (6Gb) Multifasta File ?
fasta
updated 20 months ago by ▴ 80 • written 11.8 years ago by ▴ 320
185
votes
45
replies
32k
views
27 follow
How To Organize A Pipeline Of Small Scripts Together?
pipeline general
updated 7 months ago by 43k • written 14.2 years ago by 28k
4
votes
45
replies
7.9k
views
SAM file wrong? help with validatesamfile
EXOME
updated 13 months ago by 43k • written 7.9 years ago by ▴ 110
237
votes
45
replies
72k
views
34 follow
What Is The Best Pipeline For Human Whole Exome Sequencing?
next-gen sequencing illumina exome human
updated 12.9 years ago by ▴ 50 • written 14.0 years ago by 5.0k
22
votes
45
replies
13k
views
9 follow
Tool to separate human and mouse rna seq reads
RNA-Seq next-gen-sequencing
updated 15 months ago by 43k • written 9.0 years ago by ★ 1.2k
185
votes
44
replies
83k
views
30 follow
Drawing Chromosome Ideograms With Data
ideogram visualization chromosome
updated 8 weeks ago by 54k • written 14.2 years ago by ★ 1.7k
90
votes
44
replies
60k
views
28 follow
Tool to generate proportional Venn Diagrams?
visualization
updated 2.1 years ago by 43k • written 13.1 years ago by ★ 3.4k
21
votes
44
replies
4.4k
views
How to analyze Illumina RNASeq data
RNA-Seq sequencing next-gen
3.8 years ago by Kumar ▴ 170
121
votes
44
replies
21k
views
21 follow
What Is Your Favorite Question To Ask When Interviewing Potential Bioinformaticians?
subjective
updated 15 months ago by 43k • written 13.9 years ago by 5.3k
46
votes
44
replies
25k
views
9 follow
bash loop for alignment RNA-seq data
RNA-Seq next-gen alignment
updated 20 months ago by 43k • written 10.1 years ago by ★ 1.5k
122
votes
44
replies
11k
views
24 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 6 months ago by 43k • written 11.5 years ago by 100k
43
votes
44
replies
6.1k
views
14 follow
Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinformatics stuff?
metagenomics amplicon macbook Intel MacOs
updated 7 months ago by ★ 3.5k • written 7 months ago by ▴ 10
196
votes
44
replies
72k
views
33 follow
Tutorial: Analysing Microarray Data In Bioconductor
microarray-analysis bioconductor
updated 16 months ago by 43k • written 11.6 years ago by 20k
99
votes
44
replies
24k
views
33 follow
Best Free Text Editor For All Popular Languages (R, Python, Perl Etc..)
text r perl python
updated 6.7 years ago by ★ 2.6k • written 12.2 years ago by ★ 1.5k
102
votes
44
replies
9.1k
views
22 follow
What Are Numbers Every Bioinformatician Should Know?
knowledge career
updated 14 months ago by 43k • written 10.7 years ago by 24k
27
votes
44
replies
15k
views
How to remove contamination from the transcriptome assembly
RNA-Seq contamination assembly blast Hiseq reads
updated 21 months ago by 43k • written 8.5 years ago by ★ 1.9k
155
votes
44
replies
32k
views
29 follow
Which Bioinformatic Friendly Pipeline Building Framework?
scripting
updated 22 months ago by 43k • written 10.3 years ago by ★ 2.1k
130
votes
44
replies
34k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 14 months ago by 43k • written 7.7 years ago by ★ 1.0k
31
votes
43
replies
20k
views
11 follow
Volcano plot help code
R rna-seq
updated 5.9 years ago by ▴ 480 • written 6.1 years ago by ▴ 80
57
votes
43
replies
16k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 14 months ago by 43k • written 5.3 years ago by 11k
19
votes
43
replies
5.7k
views
Annotation of huge number of CNV files
CNV annotation TCGA
5.7 years ago by nazaninhoseinkhan ▴ 520
16
votes
43
replies
6.8k
views
Stuck on calculating principal components
Vegan R software error SNP
updated 6.5 years ago by ▴ 280 • written 6.5 years ago by ★ 4.3k
59
votes
43
replies
21k
views
18 follow
Tutorial: Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone
pbalign pacbio arrow smrt-limk
updated 14 months ago by 43k • written 6.7 years ago by ★ 1.4k
116,999 results • Page 2 of 2340
Recent Votes
Answer: How to download dbSNP153 vcf files in hg19/GRCH37 version
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Answer: TFs and Gene databases
A: Is there a software that can compare phylogenetic trees to each othe (face to fa
Comment: Differentially Expressed Genes between two conditions (scRNA, single GEO dataset
Differentially Expressed Genes between two conditions (scRNA, single GEO dataset with multiple samples and no cell annotations)
Recent Locations • All
United States, 1 minute ago
United States, 4 minutes ago
Europe, 8 minutes ago
United States, 8 minutes ago
Canada, 10 minutes ago
Chula Vista, 11 minutes ago
United States, 12 minutes ago
Recent Awards • All
Popular Question to finswimmer 16k
Popular Question to Ezequiel • 0
Popular Question to alanh ▴ 170
Scholar to Peter 6.0k
Popular Question to ashkan ▴ 160
Supporter to Umer ▴ 50
Scholar to zx8754 11k
Recent Replies
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool by GenoMax 142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by bk11 ★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs by dthorbur ★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
Comment: zero TPM for many gene including housekeeping when using kallisto by ashkan ▴ 160
@atpoint I checked all transcripts of GAPDH. they all have 0 TPM.
Comment: how to treat the replicates while performing WGCNA by andres.firrincieli 3.6k
> 1) I do not want to merge the MEs rather I asked about replicates, as > some replicates of same sample are showing different behavior for…
Comment: How to systematically check if a bam file is truncated by alanh ▴ 170
For more details about what `samtools quickcheck` actually checks for, add a few `-v`'s to the command line. $ samtools quickcheck -…
Comment: How to handle duplicated genes in TCGA data? by Zhenyu Zhang ★ 1.2k
Second what is said above, ensembl_id is the unique identifier. As a good bioinformatics habit, always use unique identifier for your anal…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by Ram 43k
Yes. The solution to most things with ComplexHeatmap is to play around with parameters.
Comment: Reconstruction of locus, order contigs by BATMAN • 0
I do not want to re-annotate the genome. I ask if there is a way to extract the region aligned with the mauve, in .gbk format.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thank you. What exactly do you mean? Changing `ha = rowAnnotation(text = anno_mark(at = mark_at, labels = gene_names_interesting_in_cluster…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by Ram 43k
Try tweaking the `gp` of the rowAnnotation instead of tweaking the `annotation_name_gp` - that might do the trick.
Comment: Help! Reconstruction of locus, order contigs by dthorbur ★ 2.0k
I don't understand your comment. What do you mean? > my idea is not to have to write it down If you have an alignment already, why can't…
Comment: Details on salmon index by Rob 6.6k
Hi Lorenzo, That is correct. The initial version of salmon used the RapMap index explained above. When we published the selective align…
Traffic: 2321 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6