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12,306 results • Page
2 of 247
Sort: Rank
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Votes
Replies
0
votes
0
replies
87
views
Rescaling normalized enrichment score (NES)
heatmap
1 day ago by
CTLong
▴ 110
0
votes
2
replies
160
views
Splitting query fasta file for Diamond Blastp make the process faster?
DIAMOND
1 day ago by
kmat
• 0
0
votes
1
reply
143
views
Mapping difference with BWA
variant-calling
samtools
bam
BWA
genomics
updated 1 day ago by
ATpoint
82k • written 1 day ago by
rj.rezwan
• 0
0
votes
0
replies
98
views
Kegg Pathways to Circos
Genomics
KEGG
Circos
1 day ago by
dlera.lozano
▴ 10
0
votes
0
replies
110
views
DIFFBIND boxplot results, p value not significant
DiffBind
ChIP-seq
23 hours ago by
RD
▴ 10
3
votes
6
replies
325
views
Problem in getting geo file through GEOQUERY
geoquery
Geo
updated 20 hours ago by
Ram
44k • written 1 day ago by
anasjamshed
▴ 120
0
votes
1
reply
171
views
Multi-ploid data in ANGSD and NGSadmix
ancestry
diploid
haploid
admixture
updated 1 day ago by
andersdetermig
▴ 20 • written 2 days ago by
Christopher
• 0
0
votes
2
replies
307
views
transanno liftvcf "Error: length of chromosome [chr] is not equal to length in chain file. Are you using correct reference?"
liftover
transanno
1 day ago by
ezz3
• 0
1
vote
10
replies
612
views
Add stats to the plot
R
1 day ago by
Ghada
• 0
0
votes
4
replies
224
views
Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
GATK
UnifiedGenotyper
1 day ago by
shpak.max
▴ 50
2
votes
4
replies
251
views
Allele count of 2 for homoplasmic MT variants in VCF
Variant-Calling
GATK
VCF
18 hours ago by
Arton
▴ 10
1
vote
3
replies
189
views
downloading chemical database from ChEMBL
ChEMBL
PyRMD
Virtual-Screening
updated 1 day ago by
GenoMax
142k • written 1 day ago by
s
• 0
0
votes
3
replies
179
views
Where are the illumina adapters on Trimmomatic take from?
rna-seq
trimmomatic
updated 1 day ago by
GenoMax
142k • written 1 day ago by
bioinfo
▴ 150
1
vote
2
replies
169
views
Multiplexing for pooled CRISPR screen sequencing
multiplex
CRISPR-screen
Illumina
21 hours ago by
Tuấn Anh
• 0
2
votes
4
replies
1.2k
views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
4 hours ago by
Aspire
▴ 330
1
vote
3
replies
292
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
1 day ago by
Pegasus
▴ 100
0
votes
2
replies
193
views
Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis of Spleen Samples from Different Conditions
Seurat
scRNA-Seq
Single-Cell
1 day ago by
Shukai
• 0
1
vote
3
replies
194
views
Question about samtools view flags (paired reads vs. properly paired reads)
samtools
updated 1 day ago by
Pierre Lindenbaum
162k • written 1 day ago by
mrk
• 0
0
votes
3
replies
237
views
z-score of gene set
z-score
scRNA
gene-set
1 day ago by
Hien
• 0
3
votes
2
replies
202
views
converting transcript IDs (Ensembl) to gene symbols in R
RNA-seq
updated 1 day ago by
GenoMax
142k • written 2 days ago by
ashkan
▴ 160
0
votes
0
replies
104
views
Linking AMR Genes to Taxonomy in Soil Metagenomics
metagenomics
bacteria
wgs
AMR
resistome
updated 2 days ago by
GenoMax
142k • written 2 days ago by
LuciaNhu
• 0
1
vote
2
replies
181
views
How can we convert a vcf to fasta, so that I can blast some genes against that whole genome sequences?
blast
fasta
vcf
gene
updated 1 day ago by
Ram
44k • written 2 days ago by
Harshita
• 0
3
votes
0
replies
117
views
Comparing ATAC-seq narrowPeak Files from Chicken and Mouse
liftOver
ATAC-seq
csaw
updated 1 day ago by
Ram
44k • written 2 days ago by
Rafael Soler
★ 1.2k
0
votes
0
replies
127
views
Job:
PhD position for metagenomics analysis at the University of Udine
metagenomics
updated 1 day ago by
Ram
44k • written 2 days ago by
Fabio Marroni
★ 3.0k
3
votes
5
replies
472
views
Practical Haplotype Graph v2 not finding correct paths
Pangenome
PHG
graph
2 days ago by
beantkapoor16
▴ 10
0
votes
1
reply
132
views
DRAGEN gVCF files and joint calling GATK-GenomicsDB
DRAGEN
GenomicsDB
updated 2 days ago by
DBScan
▴ 310 • written 2 days ago by
brunomiwa
• 0
0
votes
0
replies
90
views
Last step of metagenome analysis before visualization
metagenome
python
analyis
2 days ago by
Ayda Ecem
• 0
0
votes
3
replies
161
views
Generating a Bed file from a Fasta file
bed
NullSeq
updated 1 day ago by
Ram
44k • written 2 days ago by
pirku
• 0
0
votes
3
replies
1.8k
views
Running STRUCTURE from command line
STRUCTURE
updated 1 day ago by
Ram
44k • written 3.0 years ago by
giulia.trauzzi
▴ 10
1
vote
3
replies
557
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
updated 2 days ago by
Klaus S
▴ 160 • written 5 weeks ago by
Zeng Hao
▴ 40
0
votes
0
replies
88
views
Calculated LAI is too large
annotation
LAI
assembly
TE
genome
2 days ago by
Yao
▴ 30
1
vote
1
reply
735
views
Herald:
The Biostar Herald for Monday, November 01, 2021
herald
written 2.6 years ago by
Biostar
2.8k
19
votes
10
replies
7.3k
views
7 follow
T2T-CHM13 "complete" human genome gff/gtf annotation file
genomics
written 3.0 years ago by
noodle
▴ 590
0
votes
0
replies
88
views
How to recover the entire sequence from all_contig_annotations.csv?
VDJ
single-cell
TCR-seq
cellranger
10x
2 days ago by
dawnyipingzou
• 0
0
votes
4
replies
230
views
Where to find old version of GATK best practice
gatk
1 day ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
115
views
Nextflow docker: Error response from daemon
sarek
gatk4
docker
nextflow
updated 2 days ago by
Pierre Lindenbaum
162k • written 2 days ago by
Peter Chung
▴ 200
0
votes
0
replies
93
views
News:
Online course- Advanced Python for Life Sciences
Python-Programming
Data-Visualisation
Machine-Learning
updated 1 day ago by
Ram
44k • written 2 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
126
views
CreateSeuratObject taking very long
seurat
updated 2 days ago by
Nitin Narwade
★ 1.6k • written 2 days ago by
eae6d2e7
• 0
1
vote
2
replies
210
views
Elbow plot question (scRNA seq data analysis - scanpy tutorial)
scanpy
2 days ago by
ojaswinipandey
• 0
1
vote
4
replies
298
views
How to find SRA sequences of some fungal whole genome sequences if only Biosample ID is available?
SRA
whole-genome-sequencing
NCBI
updated 2 days ago by
Ram
44k • written 2 days ago by
Harshita
• 0
2
votes
4
replies
239
views
Filter Genome for Specific Sites
bedtools
updated 2 days ago by
Ram
44k • written 2 days ago by
Anita
• 0
0
votes
3
replies
252
views
Error in using BioSampleParser tool: subscript out of bounds
R
updated 2 days ago by
marco.barr
▴ 130 • written 3 days ago by
Mohamed Samir
▴ 30
1
vote
1
reply
128
views
Generating Group/Cluster Lists from fastq files
Sequencing
RNA-seq
DNA-Seq
updated 2 days ago by
GenoMax
142k • written 3 days ago by
niruf
• 0
0
votes
0
replies
96
views
News:
Online course: Network analysis in Systems Biology with R/Bioconductor
Bioconductor
Systems-Biology
Network-Analysis
R
updated 2 days ago by
Ram
44k • written 3 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
135
views
Herald:
The Biostar Herald for Monday, May 20, 2024
herald
3 days ago by
Biostar
2.8k
3
votes
5
replies
439
views
Super ehancers
enhancers
updated 1 day ago by
jared.andrews07
★ 17k • written 21 days ago by
Oburah
• 0
0
votes
2
replies
182
views
vcf phasing
beagle
WhatsHap
phasing
1 day ago by
safeassli
▴ 10
0
votes
2
replies
209
views
How to generate an Upset plot in R to plot the shared variants between cell free DNA samples
r
Upset
2 days ago by
sainavyav22
• 0
0
votes
1
reply
608
views
Illumina methylation EPIC V2 array
ewas
methylation
enrichment
missMethyl
EPIC
updated 3 days ago by
fu_entomology
▴ 40 • written 8 months ago by
juliviglino
• 0
1
vote
2
replies
194
views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
updated 2 days ago by
Ram
44k • written 3 days ago by
Sony
▴ 10
12,306 results • Page
2 of 247
Recent Votes
Permanent Position as Researcher/Computational Biologist at the National Genomics Infrastructure (Sweden)
Permanent Position as Researcher/Computational Biologist at the National Genomics Infrastructure (Sweden)
Downloading NCBI Blast nt database
Comment: log2 fold change in RNA-seq analysis
Comment: log2 fold change in RNA-seq analysis
Answer: Ideal PC configurations and operating system for bioinformatics laboratory
correct way of analyzing cell proportions in singlecell data
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Popular Question
to
a.bibek52
▴ 10
Teacher
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dsull
★ 6.1k
Popular Question
to
adarsh_pp
▴ 40
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Answer: Mouse or Rat Gene Expression Data Similar to GTEx
by
jared.andrews07
★ 17k
MGI has a [Gene Expression Database](https://www.informatics.jax.org/expression.shtml) that'll largely get you what you want.
Comment: Difference in Bismark output methylation call files and coverage files
by
Papyrus
★ 2.9k
Your files end in `CpG_report` so they are the "genome-wide cytosine report output". If you look at the [Bismark documentation][1] you will…
Answer: Error when looping over multiple columns in a data frame in R
by
Mohamed Samir
▴ 30
Dear Jeremy, Thanks. What I could not understand why you wrote it like : cutpoint_results[[col_name]] ? Is it because it is a list result…
Comment: BEAST2.5 Chloroplast Divergence Time using Fossil Records
by
Ram
44k
Do not use all caps - it's bad etiquette. I've fixed things for you this time.
Comment: minfi::getQC - badsamplecutoff 10.5
by
Papyrus
★ 2.9k
I've recently also analyzed EPICv2 and have noticed that the log2 median intensities (and particularly the "uMed" channel), for an otherwis…
Comment: log2 fold change in RNA-seq analysis
by
May Ling
• 0
Thank you so much for the confirmation Sir! Appreciate that. I think the paragraph was trying to say that: a fold change greater than **…
Comment: Difference in Bismark output methylation call files and coverage files
by
skdv2522
• 0
Chr1 192 + 0 0 CG CGA Chr1 193 - 0 0 CG CGA Chr1 197 + 0 0 CG CGT Chr1 198 - 0 0 CG CGG Chr1 218 + 0 0 CG CGA Chr1 …
Comment: Error with BiocParallel. No barcodes files found
by
Pierre Lindenbaum
162k
cross-posted: https://stackoverflow.com/questions/78522566/ > Do not post on multiple forums - that is just bad etiquette. What's worse, y…
Comment: log2 fold change in RNA-seq analysis
by
dsull
★ 6.1k
Your understanding is correct. That attached highlighted sentence is wrong.
Comment: minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of s
by
June
• 0
Hello, I just started working on analyzing methylation EPIC array data using minfi. Data is generated on EPICv2 array and I'm using up…
Comment: Classic threshold for log2 fold change in RNA-seq experiment
by
Ram
44k
Please do not add answers unless you're actually answering the top level question. Open your own question if the forum has not addressed it…
Comment: log2 fold change in RNA-seq analysis
by
May Ling
• 0
Thank you for your prompt reply Sir! I think I finally understand the concept. Please correct me if I'm wrong: Let's say we are comparing …
Comment: log2 fold change in RNA-seq analysis
by
Hatchet
▴ 10
He means that the result of DEA will contain DEGs of A vs B. He gets LFC numbers in one column and positive LFC numbers will mean positive …
Comment: Z score
by
Akash D
▴ 50
I made this. Z scored on log2FC? will anyone support me on this? 3 groups A,B,C
Comment: log2 fold change in RNA-seq analysis
by
i.sudbery
19k
There is no such thing as a fold change of -2. Fold change is expression_in_condition_A/expresssion_in_condition_B as expression is a…
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