0
votes
1
reply
203
views
0
votes
2
replies
213
views
6
votes
2
replies
215
views
updated 3 days ago by
Gordon Smyth
★
7.1k
•
written 3 days ago by
gBioStar5
▴
10
2
votes
5
replies
377
views
3
votes
1
reply
190
views
0
votes
0
replies
147
views
0
votes
0
replies
161
views
0
votes
0
replies
152
views
3 days ago by
RT
▴
10
2
votes
0
replies
147
views
3 days ago by
carlopecoraro2
★
2.5k
0
votes
8
replies
412
views
3 days ago by
marco.barr
▴
100
0
votes
1
reply
357
views
0
votes
2
replies
210
views
updated 2 days ago by
Ram
43k
•
written 3 days ago by
sainavyav22
•
0
3
votes
4
replies
291
views
0
votes
0
replies
180
views
0
votes
3
replies
543
views
0
votes
5
replies
292
views
8 hours ago by
feather-W
•
0
0
votes
3
replies
282
views
updated 3 days ago by
Pierre Lindenbaum
161k
•
written 4 days ago by
Matthew
•
0
0
votes
1
reply
143
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
Lambodarswain316
•
0
2
votes
2
replies
225
views
1
vote
1
reply
437
views
4
votes
3
replies
2.9k
views
updated 4 days ago by
Pierre Lindenbaum
161k
•
written 4 days ago by
Lila M
★
1.2k
2
votes
3
replies
206
views
updated 4 days ago by
Pierre Lindenbaum
161k
•
written 4 days ago by
ScottDansk
▴
10
1
vote
0
replies
131
views
0
votes
1
reply
179
views
updated 4 days ago by
marco.barr
▴
100
•
written 4 days ago by
odi
▴
10
0
votes
6
replies
2.1k
views
1
vote
1
reply
143
views
1
vote
2
replies
1.6k
views
0
votes
0
replies
111
views
updated 4 days ago by
Ram
43k
•
written 4 days ago by
curious_butterfly
•
0
1
vote
4
replies
310
views
1
vote
3
replies
234
views
0
votes
0
replies
115
views
0
votes
2
replies
242
views
0
votes
9
replies
1.5k
views
0
votes
2
replies
211
views
updated 13 hours ago by
Zhenyu Zhang
★
1.2k
•
written 4 days ago by
elisheva
▴
120
0
votes
0
replies
101
views
1
vote
1
reply
269
views
updated 4 days ago by
Ram
43k
•
written 8 days ago by
starswillfade
▴
10
0
votes
2
replies
217
views
0
votes
0
replies
118
views
updated 4 days ago by
Ram
43k
•
written 4 days ago by
carlopecoraro2
★
2.5k
4
votes
5
replies
3.4k
views
updated 4 days ago by
DavidStreid
▴
90
•
written 6.4 years ago by
madhu.9124
▴
60
0
votes
2
replies
151
views
4
votes
2
replies
255
views
3
votes
4
replies
4.0k
views
updated 4 days ago by
chloek88
•
0
•
written 5.5 years ago by
Philipp Bayer
8.4k
3
votes
5
replies
347
views
10
votes
3
replies
305
views
updated 5 days ago by
b.contreras.moreira
▴
180
•
written 5 days ago by
ijarne
•
0
0
votes
0
replies
141
views
1
vote
2
replies
188
views
0
votes
0
replies
118
views
5 days ago by
Omics data mining
▴
260
0
votes
2
replies
176
views
5 days ago by
njornet
▴
20
0
votes
2
replies
201
views
Recent Votes
Recent Locations •
All
WCIP | Glasgow | UK, just now
India, 1 minute ago
India, 4 minutes ago
South Korea, 4 minutes ago
Russia, 4 minutes ago
South Korea, 5 minutes ago
Bologna, 5 minutes ago
Recent Awards •
All
Popular Question to
anasjamshed
▴
120
Popular Question to
pablo
▴
300
Scholar to
Bastien Hervé
5.3k
Popular Question to
rj.rezwan
•
0
Scholar to
colindaven
6.4k
Popular Question to
Jen
▴
70
Recent Replies
Answer: Single-cell RNA-seq FindMarker and EnhancedVolcano Plot: most genes are low -log
by
yau
•
0
Dear Mensur,
Thanks so much for your reply!!
In my case, I got 1 control(healthy) and 2 disease mouse Single cell RNA-sew data, so I …
Comment: BWA alignment
by
ATpoint
82k
The relevant code line is precisely the same as in the question.
Answer: imputation through beagle
by
dthorbur
★
1.9k
Building a reference panel from the samples you intend to impute seems like a very circular approach. Plus, GBS is a reduced representation…
Answer: Single-cell RNA-seq FindMarker and EnhancedVolcano Plot: most genes are low -log
by
Mensur Dlakic
★
27k
You seem to have too stringent of a p-value cutoff (1e-5). Hopefully you get the concept of how the interplay of `-log10P-value` and `log2F…
Answer: Single-cell RNA-seq FindMarker and EnhancedVolcano Plot: most genes are low -log
by
yau
•
0
![enter image description here][1]
[1]: /media/images/7199a665-b13a-40c8-a065-313cf2b7
Answer: Using samtools with GCS (google cloud storage) on a docker container seems to gi
by
aw7
▴
270
This is a bit late, but the first thing to go is to run `samtools --version` and make sure the docker samtools is configured with the the G…
Answer: Long reads and fixing of mate-pair issues/marking duplicates with samtools
by
aw7
▴
270
I do not think `samtools fixmate` and `markdup` are going to work on PacBio long reads. `fixmate` is for setting and repairing mate inform…
Comment: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
by
Azra
▴
10
I see, thank you!
Comment: Publish a Letter in higher impact vs Research article in lower impact
by
shenwei356
8.5k
From the perspective of a Chinese, I'd like to choose a letter in a famous journal with a high IF.
If I'm a PI, I think they are both OK, I…
Comment: Publish a Letter in higher impact vs Research article in lower impact
by
ATpoint
82k
This is off-topic here. I suggest https://academia.stackexchange.com/
Anyway, since hiring procedures in academia are much focused on IF a…
Comment: BWA alignment
by
Vahid
•
0
Thank you very much for your assistance. The problem has been solved; it was an index issue.
Answer: Manual Assembly and Protein Translation, HELP, assignment revision
by
Philipp Bayer
8.4k
You asked the same question before, and I told you about the reverse complementing (https://www.biostars.org/p/9594474/#9594475 ), and now …
Answer: Two-Sample Mendelian Randomization: Association between Instrumental Variable an
by
Zeng Jingyu
▴
60
Hi Nikki,
I have to say that I didn't fully understand your question. You said "don't care the association between Instrumental Variable a…
Comment: RNAseq one control two conditions, shared and exclusive genes
by
Mohamed Abderrahmane
▴
20
I'm not entirely certain about the difference, but I assume it yields similar results. The method you're currently employing seems faster a…
Answer: BWA alignment
by
a.alnawfal.1992
▴
260
The error [main_samview] suggests that Samtools is expecting a SAM file header but isn't getting one. This often occurs when the pipe (|) b…
Traffic: 2336 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6