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13,532 results • Page
2 of 271
Sort: Rank
Rank
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Votes
Replies
0
votes
3
replies
159
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 1 day ago by
GenoMax
142k • written 1 day ago by
Assa Yeroslaviz
★ 1.8k
7
votes
1
reply
148
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 1 day ago by
dariober
14k • written 1 day ago by
nhaus
▴ 360
2
votes
2
replies
157
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
22 hours ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
241
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 1 day ago by
Weiwen
• 0 • written 2 days ago by
MICOS
▴ 10
0
votes
1
reply
126
views
Correlation Analysis
statistics
methylation
NGS
expression
updated 13 hours ago by
manaswwm
▴ 510 • written 1 day ago by
Researcher
▴ 30
1
vote
2
replies
165
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
1 day ago by
robert.flynn.21
• 0
1
vote
1
reply
201
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 1 day ago by
Michael
54k • written 2 days ago by
Guillermo
• 0
1
vote
5
replies
306
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 15 hours ago by
Michael
54k • written 1 day ago by
qwertyuiop26
• 0
0
votes
1
reply
155
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 1 day ago by
ATpoint
82k • written 2 days ago by
MAPK2
▴ 40
0
votes
2
replies
207
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 1 day ago by
Xiaofen
• 0 • written 1 day ago by
toddknutson
▴ 60
0
votes
1
reply
125
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
updated 2 days ago by
LChart
3.9k • written 2 days ago by
David
• 0
1
vote
2
replies
159
views
Where to get the following bed file?
WES
bed
reference
file
updated 2 days ago by
GenoMax
142k • written 2 days ago by
wyuan37
• 0
0
votes
0
replies
102
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
2 days ago by
Scott McKay
▴ 30
0
votes
0
replies
101
views
Cellphonedb results
cpdb
visulization
cellphonedb
2 days ago by
piotto
▴ 20
0
votes
0
replies
118
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
2 days ago by
belloy
• 0
0
votes
3
replies
221
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 1 day ago by
swbarnes2
14k • written 2 days ago by
Ngrin
• 0
1
vote
6
replies
676
views
anRichment is missing
WGCNA
anRichment
updated 2 days ago by
GenoMax
142k • written 5 months ago by
michael.flower.14
▴ 180
1
vote
1
reply
195
views
Gene ontology and homologs
gene-ontology
updated 2 days ago by
geneontologyhelp
▴ 400 • written 3 days ago by
beshka194
• 0
1
vote
2
replies
211
views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
R
updated 2 days ago by
zx8754
11k • written 2 days ago by
snajafy
• 0
0
votes
0
replies
106
views
Cox Model with interaction item interpretation
Cox
2 days ago by
Bine
▴ 60
0
votes
0
replies
93
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
2 days ago by
Javier
• 0
1
vote
7
replies
466
views
Question regarding WGCNA
WGCNA
Network-construction
updated 4 hours ago by
Ram
43k • written 5 days ago by
deepak
• 0
0
votes
0
replies
101
views
vdjtools
vdjtools
2 days ago by
yueli7
▴ 250
1
vote
0
replies
135
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
2 days ago by
Biostar
2.7k
0
votes
1
reply
211
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 1 day ago by
andres.firrincieli
3.6k • written 2 days ago by
Antonio
• 0
0
votes
0
replies
111
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 2 days ago by
Ram
43k • written 2 days ago by
sidrah.maryam
▴ 50
0
votes
0
replies
97
views
Normalizing AMR gene count data
abundance
RGI
updated 2 days ago by
Ram
43k • written 2 days ago by
arshad1292
▴ 100
0
votes
0
replies
110
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 2 days ago by
Pierre Lindenbaum
161k • written 2 days ago by
sarumonsus
• 0
1
vote
2
replies
297
views
Tissue-specific DEG analysis with DEseq2
DEseq2
RNA-seq
DEG
R
2 days ago by
M.
▴ 30
0
votes
0
replies
113
views
How to implement an IGV to streamlit app?
python
streamlit
igv
2 days ago by
avigail.shnaider
• 0
1
vote
5
replies
295
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 2 days ago by
Ram
43k • written 2 days ago by
snajafy
• 0
0
votes
2
replies
260
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
updated 2 days ago by
GenoMax
142k • written 3 days ago by
mropri
▴ 150
0
votes
1
reply
299
views
DMRcate ranges liftover hg19 to hg38
DMRcate
Liftover
DMR
Methylation
annotation
updated 3 days ago by
aaron.stevens
• 0 • written 3 months ago by
sativus
▴ 20
2
votes
2
replies
228
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB
protein
STRING-DB-API
3 days ago by
brandon
• 0
0
votes
0
replies
125
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
3 days ago by
KHURRAM SHAHZAD
• 0
1
vote
5
replies
366
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 2 days ago by
Ram
43k • written 3 days ago by
snajafy
• 0
0
votes
0
replies
112
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
3 days ago by
Christopher
• 0
4
votes
1
reply
231
views
LD-prune variants while maintaining a list of SNPs
snp
vcf
plink
filtering
independent
updated 2 days ago by
zx8754
11k • written 4 days ago by
Jautis
▴ 560
2
votes
2
replies
316
views
Association study using SNP data
Association
Allele
Parentage
SNP
3 days ago by
drajangirija
• 0
0
votes
0
replies
109
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
3 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
116
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
3 days ago by
DGTool
• 0
0
votes
1
reply
184
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 2 days ago by
bk11
★ 2.4k • written 3 days ago by
Yoosef
▴ 60
0
votes
1
reply
497
views
Job:
Seeking Bioinformatics/Drug Design Opportunities - PhD in Pharmacology with Experience in RNA-seq, CADD & Deep Learning Molecular Generation
search
job
updated 3 days ago by
GenoMax
142k • written 3 days ago by
tulip
• 0
3
votes
4
replies
412
views
Design matrix Differential expression analysis
RNA-seq
Differential-expression
updated 2 days ago by
Gordon Smyth
★ 7.1k • written 5 days ago by
SHN
▴ 40
4
votes
2
replies
259
views
GRCh38.gmap file
gnomix
gmap
4 days ago by
lorena9132
▴ 10
2
votes
3
replies
819
views
Issues with Mixture file when using CIBERSORTx
Deconvolution
CIBERSORTx
updated 4 days ago by
vjanve
• 0 • written 7 months ago by
mateomejias
• 0
0
votes
1
reply
258
views
creating batch colum for batch correction
batch-correction
combat
2 days ago by
Expert
▴ 10
1
vote
4
replies
358
views
Segmentation error while using a tool
smalt
updated 4 days ago by
Mensur Dlakic
★ 27k • written 4 days ago by
Ruqaiya
• 0
0
votes
1
reply
213
views
Help with DGEList function
DGEList
R
updated 3 days ago by
marco.barr
▴ 90 • written 4 days ago by
Natali
• 0
0
votes
0
replies
153
views
Homer motif analysis
Homer
4 days ago by
daffodil
▴ 10
13,532 results • Page
2 of 271
Recent Votes
Difference between Pysam Pileup and Fetch
Answer: Where can I download some example BAM files?
Comment: Where can I download some example BAM files?
Where can I download some example BAM files?
Verify if all the components of a pathway are present in a genomes
removeBatchEffect explained using base R linear models
How to get number of characters (nucleotides) in fasta file
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Answer: Contig assembly task, errors
by
Philipp Bayer
8.4k
Feels a bit strange for an aptitude test, feels more like homework. 1) seems OK to me, just chuck them into CAP3 and see what falls out.…
Comment: Help with Biopython for Beginner
by
Pierre Lindenbaum
161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Answer: bcftools - reducing to "sites-only"?
by
Pierre Lindenbaum
161k
bcftools view -G in.vcf.gz <!-- Diabetic foot ulceration (DFU) is a devastating complication of diabetes whose pathogenesis rema…
Comment: Filtering Multi-sample VCF file for all except one Genotype
by
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I probably got some of the vocabulary wrong. I thought that "Dom HOR2932 HOR3036 HOR3726 KWSBambina Rec S42IL_124" were representing my ge…
Comment: featureCounts output assigned value higher than and HISAT2 mapping.
by
Ram
43k
It's featureCount**s**, not featureCount. I've edited your post and fixed all mentions of featureCounts.
Comment: kinannote software installation problems
by
Emanoelle
• 0
Hey, I know it's been 5 years but I have the same issue. When I run the test the software is unable to perform and always deliver the follo…
Comment: STAR aligner error
by
Ram
43k
If they can't help you, we probably can't do much either. But we can optimize your STAR command. BAM SortedByCoordinate is the worst settin…
Answer: Obtaining Infinium Methylation450K manifest for hg38
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marco.barr
▴ 90
Hi, you can check it from github here: [https://zwdzwd.github.io/InfiniumAnnotation][1]. I don't know if this is what you are looking fo…
Comment: RNA seq analysis
by
ATpoint
82k
It makes absolutely no sense to conduct such an analysis. I strongly discourage you to even start with it. Results will be utterly nonsense…
Comment: Differentail gene expression results
by
swbarnes2
14k
Cross-posted: https://support.bioconductor.org/p/9158194/
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It will depend on your context and question. I guess you will want to compare gene expression between your conditions within cell types …
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You get this error when you try to compare two data frames that have different dimensions. Try using the traceback() command to figure out …
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Sorry, this was supposed to be a comment appended to the chain above. I didn't mean to post as an answer.
Comment: Exploring Diet Effects in Single-Cell RNA Sequencing
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> when I looked at the expression of aging marker genes, I noticed that diets sequenced in the same batch appeared more similar. How simil…
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DavidStreid
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Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
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