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Use `vdb-validate` included in `sratoolkit` to check your `*.sra` files for integrity.
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This `fastq-dump --split-files *.sra` gives you fastq files. I am not sure how, with the given information, one might debug your problem. A…
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DESeq2 has a "lessAbs" test which gioves you a pvalue that tests whether a fold change is **below** a user-defined threshold, see https://b…
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In your table RawCounts, keep only the columns corresponding to condition 1 and the control. Edit the table sampleTable to align with your …
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Thank you @atpoint, I did already investigate this error on the DADA2 github.
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Try `reformat.sh` from BBMap suite and its sampling parameters. You may get a third answer. Programs do some approximations so it is probab…
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One cannot help you with this. The error is from R, yet you show not a single line of R code.
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I am the colleague! My tool groups together plasmids based on two genetic distances: containment (how much of the smaller plasmid's sequenc…
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Ok I think I know what happened. The order of cells changed, otherwise its the same:
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If you put all your sequences in separate files but in the same directory, this program will build a cladogram based on average nucleotide …
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Thank you so much. I'm new to this and didn't realise there was a code option.
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