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116,853 results • Page
2 of 2338
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
184
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 1 day ago by
Adam
▴ 30 • written 1 day ago by
Darya
• 0
0
votes
5
replies
222
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 1 day ago by
Joe
21k • written 1 day ago by
Lemonhope
• 0
0
votes
0
replies
142
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
17 hours ago by
Winter
• 0
0
votes
5
replies
265
views
A question about reference genome for creating the consensus sequence
fasta
fa
cram
genome
1 day ago by
me
• 0
2
votes
11
replies
2.6k
views
6 follow
CNVKIT - unable to produce scatter and diagram pdfs
cnvkit
updated 1 day ago by
DGTool
• 0 • written 4.8 years ago by
ww22runner
▴ 60
2
votes
1
reply
124
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
1 day ago by
analyst
▴ 50
0
votes
0
replies
84
views
Generating .bed file and .map file for polyploid vcf file through plink
bed
polyploid
map
plink
1 day ago by
analyst
▴ 50
0
votes
0
replies
79
views
Blog:
Introduction to The Complete Sequence of a Human Genome
biotech
1 day ago by
usa.cd.genomics
• 0
0
votes
0
replies
85
views
Blog:
Overview of Nanopore Sequencing
biotech
1 day ago by
usa.cd.genomics
• 0
0
votes
0
replies
97
views
meffil.snp.concordance
meffil
methylation
snp_concordance
1 day ago by
kyj222637
• 0
0
votes
1
reply
136
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 1 day ago by
Bastien Hervé
5.3k • written 2 days ago by
sooni
▴ 20
1
vote
5
replies
401
views
HCL database download
HCL
updated 1 day ago by
Ram
43k • written 5 days ago by
sooni
▴ 20
0
votes
1
reply
242
views
barcode of TCR-sequencing
barcode
updated 2 days ago by
mizraelson
▴ 60 • written 9 days ago by
yueli7
▴ 250
0
votes
3
replies
215
views
STAR aligner error
RNA-seq
STAR
slurm
updated 1 day ago by
Ram
43k • written 2 days ago by
M.
▴ 30
0
votes
0
replies
93
views
monocle 3-- Could not get node in small cluster
monocle3
2 days ago by
synat.keam
▴ 100
0
votes
2
replies
188
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
1 day ago by
Nicholas
• 0
1
vote
4
replies
350
views
Understanding STAR output (Aligned.out.sam file)
STAR
paired-end
read
2 days ago by
heelpPlease
• 0
0
votes
7
replies
448
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
updated 1 day ago by
Wayne
★ 2.0k • written 3 days ago by
JACKY
▴ 140
0
votes
0
replies
109
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
2 days ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
456
views
HLA-HD tool for genomic imputation
genomics
imputation
bash
updated 2 days ago by
Javier
• 0 • written 3 months ago by
fra.r.silvestro
▴ 10
0
votes
1
reply
186
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 2 days ago by
GenoMax
142k • written 2 days ago by
Sony
▴ 10
5
votes
5
replies
263
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
1 day ago by
Chris
▴ 280
0
votes
2
replies
197
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 1 day ago by
swbarnes2
14k • written 2 days ago by
ahmad.sajad4541
• 0
1
vote
5
replies
203
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 2 days ago by
i.sudbery
19k • written 2 days ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
155
views
student
epitranscriptomics
updated 2 days ago by
ATpoint
82k • written 2 days ago by
useriwa
• 0
0
votes
0
replies
104
views
Imputation of missing genotypes
panel
beagle
imputation
2 days ago by
analyst
▴ 50
0
votes
3
replies
163
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 2 days ago by
GenoMax
142k • written 2 days ago by
Assa Yeroslaviz
★ 1.8k
7
votes
1
reply
153
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 2 days ago by
dariober
14k • written 2 days ago by
nhaus
▴ 360
2
votes
2
replies
162
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
1 day ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
247
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 2 days ago by
Weiwen
• 0 • written 3 days ago by
MICOS
▴ 10
0
votes
2
replies
170
views
Correlation Analysis
statistics
methylation
NGS
expression
16 hours ago by
Researcher
▴ 30
1
vote
2
replies
166
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
2 days ago by
robert.flynn.21
• 0
1
vote
1
reply
205
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 2 days ago by
Michael
54k • written 3 days ago by
Guillermo
• 0
1
vote
5
replies
312
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 1 day ago by
Michael
54k • written 2 days ago by
qwertyuiop26
• 0
0
votes
1
reply
163
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 2 days ago by
ATpoint
82k • written 3 days ago by
MAPK2
▴ 40
0
votes
2
replies
224
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 2 days ago by
Xiaofen
• 0 • written 2 days ago by
toddknutson
▴ 60
0
votes
1
reply
129
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
updated 3 days ago by
LChart
3.9k • written 3 days ago by
David
• 0
1
vote
2
replies
162
views
Where to get the following bed file?
WES
bed
reference
file
updated 3 days ago by
GenoMax
142k • written 3 days ago by
wyuan37
• 0
0
votes
0
replies
107
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
3 days ago by
Scott McKay
▴ 30
0
votes
0
replies
104
views
Cellphonedb results
cpdb
visulization
cellphonedb
3 days ago by
piotto
▴ 20
0
votes
0
replies
123
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
3 days ago by
belloy
• 0
0
votes
3
replies
228
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 2 days ago by
swbarnes2
14k • written 3 days ago by
Ngrin
• 0
1
vote
6
replies
685
views
anRichment is missing
WGCNA
anRichment
updated 3 days ago by
GenoMax
142k • written 5 months ago by
michael.flower.14
▴ 180
1
vote
1
reply
200
views
Gene ontology and homologs
gene-ontology
updated 3 days ago by
geneontologyhelp
▴ 400 • written 4 days ago by
beshka194
• 0
1
vote
2
replies
220
views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
R
updated 3 days ago by
zx8754
11k • written 3 days ago by
snajafy
• 0
0
votes
0
replies
109
views
Cox Model with interaction item interpretation
Cox
3 days ago by
Bine
▴ 60
0
votes
0
replies
97
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
14 hours ago by
Javier
• 0
1
vote
7
replies
474
views
Question regarding WGCNA
WGCNA
Network-construction
10 hours ago by
deepak
• 0
0
votes
0
replies
104
views
vdjtools
vdjtools
3 days ago by
yueli7
▴ 250
1
vote
0
replies
138
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
3 days ago by
Biostar
2.7k
116,853 results • Page
2 of 2338
Recent Votes
Answer: Seurat V5 integration
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
what is the purpose of indexing a genome
Answer: Which trajectory method is better !?
Answer: InferCNV results interpretation
Comment: absolute path for symbolic links in Snakefile
Deeptools computematrix of scale region give different result from ref point TSS.
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Scholar
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▴ 770
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Recent Replies
Comment: absolute path for symbolic links in Snakefile
by
Jesse
▴ 770
That's really handy, and much more of a general solution than stripping off the directory names! So yifangt86, if you're on Linux you can …
Comment: Truncated metadata file report from ENA Portal API
by
GenoMax
142k
Are you missing a `"` at the end of the URL. Doing wget -O test.out "https://www.ebi.ac.uk/ena/portal/api/filereport?accession=PRJNA43…
Comment: Different output for read length
by
marco.barr
▴ 100
very strange, I double checked the BAM file and it is the same one I used for your request. Are the commands I wrote above correct? How is …
Comment: Different output for read length
by
Pierre Lindenbaum
161k
the first read as a length of 1747, i wonder how you can just find '50' $ wget -qO - "https://gist.githubusercontent.com/Macdot3/4650…
Comment: Problem with Seurat package in PercentageFeatureSet function
by
bk11
★ 2.4k
Yes, `CreateAssayObject` function is used for only expression matrix.
Comment: Different output for read length
by
marco.barr
▴ 100
Here is my result, I hope you can see it. [https://gist.github.com/Macdot3/4650243a10540d8c06f728ffc16a136c][1] [1]: https://gist.gith…
Comment: Different output for read length
by
marco.barr
▴ 100
I just published my link on paste, why can't I see my public paste on the site?
Comment: cellranger error message
by
Max
• 0
I'm having a similar issue. The sample_id matches the filename prefix before _S1_L001, but I get the error: Log message: Requested sample(s…
Comment: Different output for read length
by
marco.barr
▴ 100
Thanks so much GenoMax, I'm sharing the link as you told me
Comment: Different output for read length
by
GenoMax
142k
Post the data at pastebin.com and add a link here or you could a GitHub gist. You were suspended by biostars SPAM bot since you pasted link…
Comment: Different output for read length
by
GenoMax
142k
Post the data at pastebin.com and add the link here. You were suspended by biostars SPAM bot since you pasted these links in quick successi…
Comment: RNA seq analysis
by
s.ghazala
• 0
Could you clarify on what exactly you are referring to with "SRA data table". If you are retrieving fastq files (raw data), then you could …
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
sovrappensiero
▴ 100
Thanks, Chris. I really appreciate your help. This has clarified a lot for me!
Answer: Snakemake fails to find conda in PBS
by
tim.booth
▴ 60
Snakemake does not have support for micromamba. There is an open issue: https://github.com/snakemake/snakemake/issues/2322
Comment: absolute path for symbolic links in Snakefile
by
tim.booth
▴ 60
Further to this answer - if you are using GNU coreutils (ie. any modern Linux), there is a "-r" flag to fix this problem. I typically use "…
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