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Comment: Longest transcript variant per gene
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sansan_96
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Hello again,
It works very well, thank you very much for this solution.
Comment: Longest transcript variant per gene
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Hello Mathew,
Thanks for your answer, I'll try it and come back.
Answer: Longest transcript variant per gene
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Hi, why not write code to extract the longest variant?
I copied these two in a txt file called "input.txt", and made three dummy variants …
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https://www.biostars.org/p/107759/<br>
https://www.biostars.org/p/403649/
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Sorry, what analysis are you trying to perform with these databases?
Based on your question, it appears you are using Kraken2 and Bracken.…
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I looked up a publication using CIBERSORT to see how they got the package, and indeed they acquired it through official website application…
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If you are using R, you should check the liana R implementation (https://github.com/saezlab/liana).
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Thank you Pierre, I am going to take some time to get my head around this and report back if it works.
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Thanks for the crosspost! Just trying to get things figured out.
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cross posted: https://stackoverflow.com/questions/78462732/
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