0
votes
0
replies
61
views
0
votes
0
replies
151
views
6 days ago by
ebertomeup
•
0
0
votes
0
replies
152
views
0
votes
1
reply
187
views
0
votes
1
reply
191
views
0
votes
1
reply
173
views
updated 6 days ago by
Papyrus
★
2.9k
•
written 7 days ago by
yura.grabovska
▴
90
0
votes
1
reply
165
views
0
votes
0
replies
158
views
0
votes
0
replies
165
views
0
votes
0
replies
163
views
6 days ago by
sainavyav22
•
0
0
votes
0
replies
156
views
0
votes
1
reply
170
views
0
votes
4
replies
354
views
0
votes
0
replies
140
views
0
votes
3
replies
300
views
updated 5 days ago by
Pierre Lindenbaum
162k
•
written 6 days ago by
saifulislam99121
•
0
0
votes
2
replies
271
views
updated 5 days ago by
Pierre Lindenbaum
162k
•
written 6 days ago by
melissachua90
▴
70
0
votes
4
replies
367
views
5 days ago by
kilcdincer
▴
10
0
votes
1
reply
465
views
updated 5 days ago by
GenoMax
142k
•
written 6 days ago by
huxiangyulove
•
0
0
votes
0
replies
157
views
updated 5 days ago by
GenoMax
142k
•
written 5 days ago by
yura.grabovska
▴
90
0
votes
0
replies
169
views
5 days ago by
qudrat.nii
▴
10
0
votes
0
replies
152
views
5 days ago by
kilcdincer
▴
10
0
votes
6
replies
392
views
0
votes
2
replies
277
views
0
votes
0
replies
161
views
0
votes
0
replies
153
views
0
votes
7
replies
4.3k
views
updated 5 days ago by
aidangcruickshank
▴
10
•
written 3.7 years ago by
rthapa
▴
90
0
votes
4
replies
376
views
updated 4 days ago by
txema.heredia
▴
130
•
written 6 days ago by
Ngrin
•
0
0
votes
1
reply
193
views
0
votes
5
replies
328
views
0
votes
0
replies
150
views
4 days ago by
Moinuddin
•
0
0
votes
0
replies
141
views
updated 4 days ago by
Pierre Lindenbaum
162k
•
written 4 days ago by
Mohamed Samir
▴
30
0
votes
2
replies
306
views
updated 4 days ago by
anton.i.petrov
•
0
•
written 3 months ago by
Larissa
•
0
0
votes
2
replies
326
views
0
votes
0
replies
105
views
0
votes
0
replies
115
views
3 days ago by
Hasan_Daaboul
•
0
0
votes
8
replies
545
views
updated 3 days ago by
Pierre Lindenbaum
162k
•
written 12 days ago by
ajbarrett98
•
0
0
votes
4
replies
341
views
0
votes
0
replies
103
views
0
votes
1
reply
150
views
0
votes
0
replies
83
views
0
votes
4
replies
252
views
updated 2 days ago by
Matthias Zepper
4.6k
•
written 3 days ago by
sooni
▴
20
0
votes
3
replies
242
views
updated 2 days ago by
GenoMax
142k
•
written 3 days ago by
KHURRAM SHAHZAD
•
0
0
votes
1
reply
141
views
updated 2 days ago by
marco.barr
▴
130
•
written 2 days ago by
sooni
▴
20
0
votes
1
reply
106
views
0
votes
1
reply
608
views
updated 2 days ago by
fu_entomology
▴
40
•
written 8 months ago by
juliviglino
•
0
0
votes
3
replies
202
views
updated 2 days ago by
Ram
44k
•
written 2 days ago by
Bioinformatics_begginner
▴
20
0
votes
0
replies
102
views
updated 2 days ago by
Ram
44k
•
written 2 days ago by
Asim Bin Arshad
•
0
0
votes
0
replies
95
views
0
votes
5
replies
229
views
0
votes
2
replies
208
views
Recent Votes
Recent Locations •
All
South Korea, 1 minute ago
Japan, 2 minutes ago
Bologna, 3 minutes ago
United States, 4 minutes ago
United States, 4 minutes ago
Hong Kong, 5 minutes ago
Brazil/Recife, 6 minutes ago
Recent Awards •
All
Popular Question to
liyong
▴
80
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
reza
▴
300
Popular Question to
mhale
▴
20
Teacher to
Ashutosh Pandey
12k
Recent Replies
Answer: Ideal PC configurations and operating system for bioinformatics laboratory
by
emmanouil.a
▴
120
20k are good money for some workstations ... probably you need to run more samples at the same time ... for some 1000s you could take a wor…
Comment: samtools write-index
by
LucisTheFather
•
0
```
-o alignment.sorted.bam##idx##alignment.sorted.bam.bai
```
This portion is to get .bai index, instead of .csi indexing. Although Idk th…
Comment: samtools write-index
by
LucisTheFather
•
0
Really appreciate your help Pierre!
I am a little bit confused btw. do you mean this:
```
rm -vf alignment.sorted.bam.bai
minimap2 -ax map-…
Comment: samtools write-index
by
LucisTheFather
•
0
Yeah, I did multiple split tests of my pipeline (just subset 400k rows of my fastq and run through my pipeline for quick tests)
and none of…
Comment: Which 1000 genomes 30x files should I use for imputation?
by
David-walson
•
0
Hi there. Have you found any suggestions? I have alos been working on the 1KGP high coverage data, but i have no idea about how to use it p…
Comment: MAUVE: No gene annotations in Genbank file alignments
by
pramach1
▴
40
The same problem persists for me too. Running progressiveMauve on command line on bunch of gbk files. Mauve itself runs fine and I do see t…
Answer: Error when looping over multiple columns in a data frame in R
by
Jeremy
▴
910
First of all, you should use "tag.healthy" and "methods" instead of "tag.health" and "method". Also, optimal.cutpoints() wants X to be eit…
Comment: Mouse or Rat Gene Expression Data Similar to GTEx
by
GenoMax
142k
Past thread: https://www.biostars.org/p/178266/
Answer: Mouse or Rat Gene Expression Data Similar to GTEx
by
GenoMax
142k
Mouse bodymap samples : https://ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA375882%20&o=acc_s%3Aa
Answer: Mouse or Rat Gene Expression Data Similar to GTEx
by
bk11
★
2.5k
Here is the [RatGTEx][1]
[1]: https://ratgtex.org
Comment: Random Access remote BAM files
by
a.penatauber
•
0
Hi Lucas, I am looking for a similar functionality as I'm working with a large volume of CRAM files on S3, and downloading them whole would…
Comment: from CRAM to fastq
by
ATpoint
82k
Yes, but I still think that with this syntax you get an uncompressed file, because samtools does not detect the gz suffix. Just take a `hea…
Comment: merge overlaps and remove non overlap genomic windows
by
reza
▴
300
Overlap of "Ch1 200 250" and "Ch1 150 220" is "Ch1 200 220", but I want to combine windows that have overlap. Thus, my goal is to combine …
Comment: Flag multiple filtering steps on VCF files using VEP
by
Pierre Lindenbaum
162k
I don't understand that question.
Comment: merge overlaps and remove non overlap genomic windows
by
Pierre Lindenbaum
162k
> But your answer is exactly the opposite of what I want
oh I see. but i don't understand the logic why:
"Ch1 200 250" and "Ch1 150 220" …
Traffic: 1549 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6