updated 21 hours ago by
GenoMax
142k
•
written 4.5 years ago by
Swimming bird
▴
20
1
vote
14
replies
2.3k
views
16
votes
12
replies
7.3k
views
10 follow
9
votes
9
replies
407
views
updated 2 hours ago by
dsull
★
6.0k
•
written 4 days ago by
carolofharvest
▴
30
4
votes
9
replies
2.1k
views
6 follow
3
votes
8
replies
6.5k
views
7 follow
updated 23 hours ago by
Sd
•
0
•
written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
7
replies
500
views
1
vote
7
replies
403
views
0
votes
6
replies
236
views
1
vote
6
replies
304
views
2
votes
6
replies
274
views
1
vote
5
replies
299
views
9 hours ago by
Riccardo
▴
10
0
votes
5
replies
228
views
6 follow
updated 9 hours ago by
b.contreras.moreira
▴
180
•
written 1 day ago by
JH
•
0
3
votes
5
replies
159
views
3
votes
5
replies
163
views
0
votes
5
replies
282
views
updated 10 hours ago by
Mohamed Abderrahmane
▴
20
•
written 4 days ago by
matteo.levorato
•
0
0
votes
4
replies
129
views
0
votes
4
replies
66
views
1
vote
3
replies
146
views
1
vote
3
replies
161
views
updated 21 hours ago by
jared.andrews07
★
16k
•
written 1 day ago by
yvonneh
▴
10
1
vote
3
replies
171
views
updated 15 hours ago by
Alex Reynolds
35k
•
written 22 hours ago by
SJP
•
0
1
vote
3
replies
180
views
1
vote
3
replies
211
views
updated 8 hours ago by
barslmn
★
2.1k
•
written 1 day ago by
poordumbsillyidiot
•
0
3
votes
3
replies
245
views
0
votes
2
replies
67
views
updated 2 hours ago by
GenoMax
142k
•
written 4 hours ago by
ahmad.sajad4541
•
0
0
votes
2
replies
657
views
updated 15 hours ago by
clairechung112
•
0
•
written 23 months ago by
amahdi779
•
0
0
votes
2
replies
123
views
1
vote
2
replies
173
views
2
votes
2
replies
1.7k
views
updated 10 minutes ago by
e.r.zakiev
▴
210
•
written 3.8 years ago by
n.anuragsharma
▴
40
1
vote
2
replies
273
views
2
votes
2
replies
109
views
updated 4 hours ago by
t.montserrat.ayuso
▴
10
•
written 8 hours ago by
carolofharvest
▴
30
0
votes
1
reply
108
views
updated 23 hours ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
Arun Sai Kumar
•
0
1
vote
1
reply
71
views
updated 8 hours ago by
ATpoint
82k
•
written 8 hours ago by
adi.gershon1
•
0
0
votes
1
reply
79
views
0
votes
1
reply
538
views
updated 15 hours ago by
clairechung112
•
0
•
written 2.2 years ago by
Bogdan
★
1.4k
0
votes
1
reply
152
views
updated 15 hours ago by
Chris Dean
▴
390
•
written 1 day ago by
sovrappensiero
▴
90
0
votes
1
reply
112
views
0
votes
1
reply
14
views
0
votes
0
replies
31
views
0
votes
0
replies
30
views
4 hours ago by
marco.barr
▴
90
0
votes
0
replies
51
views
11 hours ago by
Amos Bairoch
▴
120
0
votes
0
replies
33
views
0
votes
0
replies
16
views
2 hours ago by
Javier
•
0
0
votes
0
replies
20
views
0
votes
0
replies
67
views
0
votes
0
replies
48
views
0
votes
0
replies
29
views
0
votes
0
replies
70
views
0
votes
0
replies
21
views
Recent Votes
Recent Locations •
All
India, just now
United States, 2 minutes ago
Canada, 2 minutes ago
India, 4 minutes ago
outer space, 4 minutes ago
United States, 5 minutes ago
United States, 5 minutes ago
Recent Awards •
All
Popular Question to
curious
▴
750
Popular Question to
M.
▴
30
Student to
carolofharvest
▴
30
Commentator to
e.r.zakiev
▴
210
Recent Replies
Comment: Easy way to find out which allele is minor allele from bed file?
by
curious
▴
750
According to the link:
"When *generating* such filesets, PLINK 1.x defaults to swapping the alleles whenever A1's frequency is above (not …
Comment: TaxID mapping file
by
GenoMax
142k
nodesDB file should have been installed if you had used "Install" script for `blobtools` according to : https://blobtools.readme.io/docs/ta…
Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
by
e.r.zakiev
▴
210
obviously if the values are really sampled from a (quasi) normally-distributed values, then n doesn't matter, he could use t-test even with…
Comment: Converting CRAM to FastQ
by
GenoMax
142k
You can use any reference that you like at this point. Since you are planning to use GATK, you can get their version from the resource bund…
Comment: Converting CRAM to FastQ
by
Maverick
▴
10
![enter image description here][1]I was able to get my fastq files. I can see that my reference files are cached in a hts-ref directory but…
Comment: Differential Expression Analysis using DESeq2 in R
by
swbarnes2
14k
Okay, that shows us the problem, but not what we need to solve it.
But, for instance, are you sure that period after the sample name shou…
Comment: Easy way to find out which allele is minor allele from bed file?
by
bk11
★
2.4k
In the case of MAF = 0.5, I think A1 is still the minor allele. You can check the discussion in this [link][1].
[1]: https://groups.goo…
Comment: Easy way to find out which allele is minor allele from bed file?
by
curious
▴
750
Yes, but I think the problem is what to do when MAF = 0.5
Answer: Easy way to find out which allele is minor allele from bed file?
by
bk11
★
2.4k
In Plink, A1 is usually a minor allele and A2 a major allele.
.frq (basic allele frequency report)
Produced by --freq.
…
Comment: Raw counts using stringtie
by
GenoMax
142k
> Error parsing strand from GFF line
Looking at this error and the listing of files in your directory it looks like you need to `gunzip` t…
Comment: High Malat-1 expression in single cell data
by
dsull
★
6.0k
I briefly looked at those genes on a genome browser -- there are a lot of repeat elements in those genes, meaning a lot of counts assigned …
Comment: High Malat-1 expression in single cell data
by
carolofharvest
▴
30
Thank you for sharing.
What are your thoughts on the genes Gm42418, AY036118, and Gm26917? Some articles suggest that clusters with an abu…
Comment: Do I need to go back and filter my long-reads?
by
GenoMax
142k
> I think I will filter the reads ultimately.
If your data was not run and basecalled using the same exact version of pore/software for a…
Comment: Raw counts using stringtie
by
Ram
43k
What is `stringie.sh`? Try `./stringtie.sh -h` and then `more stringtie.sh`.
Traffic: 2394 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6