updated 12 hours ago by
Mohamed
•
0
•
written 8 months ago by
vincenthus
▴
70
19
votes
15
replies
2.3k
views
1
vote
10
replies
473
views
17
votes
10
replies
7.3k
views
7 follow
4
votes
10
replies
849
views
4
votes
9
replies
640
views
updated 13 hours ago by
marco.barr
▴
130
•
written 6 days ago by
diqixiaoyaoer
▴
20
1
vote
6
replies
357
views
3
votes
5
replies
409
views
updated 3 hours ago by
jared.andrews07
★
17k
•
written 19 days ago by
Oburah
•
0
3
votes
5
replies
422
views
8 hours ago by
beantkapoor16
▴
10
2
votes
5
replies
66
views
updated 10 minutes ago by
ATpoint
82k
•
written 1 hour ago by
anasjamshed
▴
120
0
votes
4
replies
187
views
5 hours ago by
Zhenyu Zhang
★
1.2k
0
votes
4
replies
59
views
35 minutes ago by
shpak.max
▴
50
1
vote
4
replies
304
views
1
vote
4
replies
233
views
1 hour ago by
shpak.max
▴
50
1
vote
3
replies
109
views
updated 2 hours ago by
Pierre Lindenbaum
161k
•
written 6 hours ago by
mrk
•
0
1
vote
3
replies
523
views
2
votes
3
replies
1.1k
views
0
votes
3
replies
113
views
0
votes
3
replies
1.7k
views
updated 3 hours ago by
Ram
44k
•
written 3.0 years ago by
giulia.trauzzi
▴
10
0
votes
3
replies
83
views
0
votes
2
replies
76
views
1
vote
2
replies
226
views
updated 14 hours ago by
colindaven
6.4k
•
written 1 day ago by
Dr.
•
0
0
votes
2
replies
168
views
8 hours ago by
Bjorn
•
0
1
vote
2
replies
194
views
updated 5 hours ago by
geneontologyhelp
▴
410
•
written 1 day ago by
Pegasus
▴
100
0
votes
2
replies
124
views
0
votes
2
replies
126
views
0
votes
2
replies
38
views
1
vote
2
replies
123
views
1
vote
2
replies
377
views
0
votes
1
reply
76
views
updated 30 minutes ago by
andersdetermig
▴
20
•
written 20 hours ago by
Christopher
•
0
0
votes
1
reply
43
views
1
vote
1
reply
701
views
0
votes
1
reply
119
views
updated 10 hours ago by
WouterDeCoster
47k
•
written 1 day ago by
safeassli
▴
10
0
votes
1
reply
100
views
updated 9 hours ago by
Nitin Narwade
★
1.6k
•
written 19 hours ago by
eae6d2e7
•
0
2
votes
1
reply
96
views
0
votes
1
reply
84
views
0
votes
1
reply
88
views
updated 15 hours ago by
Pierre Lindenbaum
161k
•
written 15 hours ago by
Peter Chung
▴
200
1
vote
1
reply
51
views
1 hour ago by
Tuấn Anh
•
0
0
votes
0
replies
49
views
0
votes
0
replies
53
views
9 hours ago by
Ayda Ecem
•
0
0
votes
0
replies
59
views
updated 3 hours ago by
Ram
44k
•
written 7 hours ago by
Fabio Marroni
★
3.0k
2
votes
0
replies
55
views
updated 3 hours ago by
Ram
44k
•
written 7 hours ago by
Rafael Soler
★
1.2k
0
votes
0
replies
61
views
updated 3 hours ago by
Ram
44k
•
written 16 hours ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
5
views
0
votes
0
replies
56
views
0
votes
0
replies
62
views
0
votes
0
replies
55
views
Recent Votes
Recent Locations •
All
United States, 3 minutes ago
USA, 4 minutes ago
United States, 5 minutes ago
Netherlands, 5 minutes ago
Oviedo, 6 minutes ago
London, United Kingdom, 6 minutes ago
United States, 7 minutes ago
Recent Awards •
All
Popular Question to
anasjamshed
▴
120
Popular Question to
liyong
▴
80
Scholar to
Ashutosh Pandey
12k
Popular Question to
O.rka
▴
720
Popular Question to
natasha.sernova
★
4.0k
Popular Question to
Picasa
▴
640
Recent Replies
Answer: Problem in getting geo file through GEOQUERY
by
ATpoint
82k
Code runs for me and finishes in seconds. Maybe some poor internet connection on your end. Just set the timeout to 9999999 and retry. If th…
Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
by
ezz3
•
0
Thanks. I was wondering if that is the case but was having some issues understanding the transanno code which is written in rust and I don…
Answer: Multi-ploid data in ANGSD and NGSadmix
by
andersdetermig
▴
20
1 ) I would not expect the haploid individuals to always cluster together but the model assumptions are violated. First of all the diploid…
Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
by
Pierre Lindenbaum
161k
"Are you using correct reference?"
may be your reference is not using the same chrM. see https://www.biostars.org/p/199796/#199803
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
shpak.max
▴
50
Could you please elaborate on what you mean by passing -L or -V, i.e. what would the appropriate argument be for -L with UnifiedGenotyper f…
Answer: Add stats to the plot
by
Ghada
•
0
It works. I have added this code
my_comparisons=list(c("HRSV", "HRSV_RBV"))
plot + stat_compare_means(method = "wilcox.test",comparis…
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
LChart
3.9k
I believe UnifiedGenotyper is a locus walker that sets `emitEmptySites() = False`. As such you will not see entries for positions that have…
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴
120
Basically this is my code:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
#
# pkgs <- rowna…
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
shpak.max
▴
50
If that were the case, I would expect there not to be any uncalled sites in the vcf, yet there are a large number of sites with "." placeho…
Comment: Problem in getting geo file through GEOQUERY
by
bk11
★
2.5k
It just runs fine for me with just a single line of code.
library(GEOquery)
GSE1145 <- getGEO("GSE1145", GSEMatrix=TRUE)
…
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
Dave Carlson
★
1.7k
I can't speak to UnifiedGenotyper, as it has been many years since GATK stopped supporting it, and I have not used it in a long time. But …
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴
120
I want to get lot of files through code
Comment: Problem in getting geo file through GEOQUERY
by
GenoMax
142k
Query seems to be timing out. Try getting the file directly here: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE1nnn/GSE1145/matrix/GSE1145-GP…
Comment: Add stats to the plot
by
Ghada
•
0
Thanks for the help. Unfortunately, did not work :(
error in asserttat_group_columns_exists(data) :
data should contain group1 and grou…
Comment: downloading chemical database from ChEMBL
by
GenoMax
142k
How about following
https://www.ebi.ac.uk/chembl/web_components/explore/activities/ --> Select a compound --> Related Targets button --> D…
Traffic: 2295 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6