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686 results • Page
1 of 14
Sort: replies
Rank
Views
Votes
Replies
76
votes
72
replies
20k
views
19 follow
Tutorial:
Clustering of DAVID gene enrichment results from gene expression studies
enrichment
david
25 days ago by
Kevin Blighe
88k
29
votes
28
replies
35k
views
11 follow
Split Fastq Files Into Chunks Of 1M Reads
split
fastq
updated 18 days ago by
thomas.heigl.ibk
• 0 • written 12.8 years ago by
Bioscientist
★ 1.7k
38
votes
24
replies
2.3k
views
10 follow
NGS forensics: how to know if data is fabricated
fastq
STAR
NGS
Illumina
updated 20 days ago by
i.sudbery
19k • written 23 days ago by
noodle
▴ 580
9
votes
23
replies
9.8k
views
Tool:
BioLabDonkey - new Mac program for molecular biologists
software
biolabdonkey
9 days ago by
vytarasov
▴ 180
13
votes
17
replies
6.1k
views
9 follow
Blastn, need help to increase speed
RNA-Seq
blastn
blast+
updated 21 hours ago by
m13113153781
• 0 • written 3.2 years ago by
chiachoong_leong93
▴ 20
7
votes
16
replies
984
views
How many reads for WGS Sequencing?
WGS
Bacterial-Genomics
21 days ago by
Ruqaiya
• 0
10
votes
16
replies
17k
views
7 follow
How Can I Count Snps In My Final Vcf Files
SNP
updated 13 days ago by
Pierre Lindenbaum
161k • written 5.8 years ago by
mostafarafiepour
▴ 180
1
vote
16
replies
759
views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast
ncbi
updated 2 days ago by
GenoMax
142k • written 5 days ago by
hophuquy0944
• 0
8
votes
16
replies
1.2k
views
How to convert plink files to Hapmap Format
GWAS
Plink
updated 24 days ago by
bk11
★ 2.5k • written 10 weeks ago by
Sofia
• 0
4
votes
15
replies
1.7k
views
how to test for differential expression in samples where a global increase in gene expression is expected
edgeR
DESeq
Differential-Expression
RNA-Seq
updated 16 days ago by
Gordon Smyth
★ 7.2k • written 5 months ago by
raplayer
▴ 10
13
votes
14
replies
991
views
High Malat-1 expression in single cell data
single-cell
updated 12 days ago by
t.montserrat.ayuso
▴ 40 • written 21 days ago by
carolofharvest
▴ 40
1
vote
14
replies
2.5k
views
Extract gRNA sequence using cutadapt
cutadapt
trimming
crispr
sequencing
updated 18 days ago by
GenoMax
142k • written 4.5 years ago by
Swimming bird
▴ 20
7
votes
14
replies
2.9k
views
6 follow
How to find tandem duplications pattern in a DNA sequence
Repeat
updated 16 hours ago by
micah
▴ 30 • written 3.1 years ago by
kumajis
• 0
10
votes
14
replies
827
views
6 follow
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
updated 13 days ago by
GenoMax
142k • written 19 days ago by
nicole.kavanagh
• 0
2
votes
14
replies
3.0k
views
6 follow
CNVKIT - unable to produce scatter and diagram pdfs
cnvkit
updated 6 days ago by
Anitha
• 0 • written 4.9 years ago by
ww22runner
▴ 60
0
votes
13
replies
3.6k
views
6 follow
Tax4Fun2 - error
tax4fun
silva
blast
updated 26 days ago by
drstalinantony28
• 0 • written 2.3 years ago by
ymj
▴ 10
9
votes
13
replies
4.8k
views
Custom Reference panel creation for data imputation from .vcf files
imputation
reference panel
updated 10 days ago by
analyst
▴ 50 • written 6.4 years ago by
David_emir
▴ 490
4
votes
12
replies
4.9k
views
10 follow
How to analyze Infinium Mouse Methylation BeadChip array data?
Methylation
Experience
Illumina
Mouse
updated 11 days ago by
Tawny
▴ 180 • written 3.0 years ago by
julia_geh
▴ 20
38
votes
12
replies
31k
views
9 follow
How to systematically check if a bam file is truncated
Exomeseq
updated 3 days ago by
alanh
▴ 170 • written 7.1 years ago by
jonessara770
▴ 240
16
votes
12
replies
7.5k
views
10 follow
how to split multi-fasta file into single fasta file named by header
genome
perl
python3
bash
python
updated 17 days ago by
rsieber
▴ 10 • written 3.2 years ago by
Kumar
▴ 120
4
votes
11
replies
905
views
Redirection of Duplicate PMIDs
pubmed
pmid
updated 26 days ago by
LauferVA
4.2k • written 27 days ago by
dominickd
• 0
2
votes
11
replies
1.0k
views
Questions about a bug when transferring cram file to bam file
sequence
samtools
bcftools
updated 21 days ago by
jkbonfield
★ 1.2k • written 4 weeks ago by
me
• 0
2
votes
11
replies
739
views
DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts in whole blood: is it normal to always get NS?
rstudio
DEG
limma
3 days ago by
egascon
• 0
25
votes
11
replies
3.8k
views
6 follow
Forum:
Site Use Guidelines
meta
biostars
Guidelines
updated 27 days ago by
Ram
43k • written 14.6 years ago by
Istvan Albert
100k
0
votes
11
replies
731
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo
scRNA-seq
STAR
snRNA-seq
MGI
24 days ago by
atowns21
• 0
19
votes
11
replies
14k
views
10 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 24 days ago by
cmdcolin
★ 3.8k • written 10.8 years ago by
J.F.Jiang
▴ 920
1
vote
11
replies
5.6k
views
Truncated Bam Error
R
next-gen
sequencing
software error
updated 14 days ago by
guanghao
• 0 • written 6.2 years ago by
vivekruhela
▴ 20
0
votes
11
replies
575
views
In IGV is this a heterogeneous mutation or false call?
mutations
IGV
heterogeneous
8 days ago by
Tuck898
• 0
2
votes
10
replies
1.1k
views
HGVS Nomenclature of Multiple Indels found in Cis
Nomenclature
HGVS
updated 8 hours ago by
Ram
43k • written 5 months ago by
LauferVA
4.2k
40
votes
10
replies
43k
views
8 follow
Batch effects : ComBat or removebatcheffects (limma package) ?
limma
sva
Combat
batch-effect
updated 21 days ago by
cwwong13
▴ 40 • written 6.8 years ago by
lessismore
★ 1.3k
1
vote
10
replies
1.1k
views
Troubleshooting RNA-seq data with DNA contamination
RNA-seq
DESeq2
DNA-contamination
26 days ago by
DKA
▴ 40
0
votes
10
replies
646
views
Low mapping rate with Salmon
RNA-seq
Salmon
Quantification
updated 20 days ago by
i.sudbery
19k • written 28 days ago by
Patadu94
• 0
1
vote
10
replies
903
views
error to run rnammer
phylogenomics
rRNA_extraction
rnammer
updated 14 days ago by
antonio.spl
• 0 • written 4 months ago by
microorganism_001
▴ 30
0
votes
9
replies
373
views
Duplicated reads (IDs) from nanopore sequencing
bam
nanopore
sequencing
4 days ago by
njornet
▴ 20
1
vote
9
replies
460
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 10 days ago by
i.sudbery
19k • written 13 days ago by
Assa Yeroslaviz
★ 1.8k
2
votes
9
replies
760
views
Filtering Multi-sample VCF file for all except one Genotype
variant
SNP
VCF
updated 5 days ago by
Pierre Lindenbaum
161k • written 13 days ago by
schmince
• 0
4
votes
9
replies
2.1k
views
Legend and hap files for imputation with 38 build
reference
38build
impute
imputation
21 days ago by
anna
▴ 20
3
votes
9
replies
642
views
Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
FASTQ
updated 26 days ago by
Istvan Albert
100k • written 28 days ago by
Κοσμάς
• 0
0
votes
9
replies
615
views
Using VEP annotation output as the input for a second VEP annotation
Annotation
VEP
VCF
5 days ago by
Arton
▴ 10
0
votes
9
replies
2.6k
views
6 follow
Cannot process all the reads in a fast5 file?
metagenome
base-calling
fastq
nanopore
updated 21 days ago by
Ram
43k • written 9 months ago by
Gio
• 0
0
votes
9
replies
1.5k
views
kinannote software installation problems
kinannote
updated 12 days ago by
Emanoelle
• 0 • written 5.8 years ago by
Elizabeth
▴ 30
0
votes
9
replies
669
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
updated 5 days ago by
Wayne
★ 2.0k • written 14 days ago by
JACKY
▴ 140
4
votes
9
replies
2.2k
views
6 follow
Same sequencing sample in multiple lanes. How to analyse it?
sequencing
bowtie2
alignment
samtools
ngs
updated 17 days ago by
ST
• 0 • written 2.2 years ago by
Federico
• 0
2
votes
9
replies
953
views
TCGA2STAT Error: Firehose connection
FIREHOSE
TCGA
updated 26 days ago by
LauferVA
4.2k • written 7 months ago by
Gnana
• 0
4
votes
9
replies
491
views
Faster Needleman-Wunsch rapid global alignment of two sequences?
Needleman-Wunsch
alignment
3 days ago by
Gabriel R.
★ 2.9k
1
vote
8
replies
966
views
Adding CB tag to bam file
samtools
bam
updated 25 days ago by
Pierre Lindenbaum
161k • written 4 weeks ago by
Maria
• 0
0
votes
8
replies
544
views
What does it mean single base resolution in sequencing?
SNP
sequencing
updated 20 days ago by
LauferVA
4.2k • written 22 days ago by
jinyu
▴ 10
3
votes
8
replies
641
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
14 days ago by
Qroid
▴ 40
2
votes
8
replies
401
views
joint callset and vcf sorting, unknown TAG issue
sort
bcftools
GLNexus
merge
VCF
updated 8 days ago by
Pierre Lindenbaum
161k • written 8 days ago by
Matteo Ungaro
▴ 100
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 18 days ago by
Sd
• 0 • written 5.1 years ago by
Nicolas Rosewick
11k
686 results • Page
1 of 14
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Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
Comment: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
ojaswinipandey
• 0
Thank you so much Dave.
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
Dave Carlson
★ 1.7k
The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
Comment: Error in using BioSampleParser tool: subscript out of bounds
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Hi Mohamed, I also thought the same thing but we run the risk of inserting other errors perhaps by modifying the function. I tried but I ha…
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Please do a few simple Google searches before asking others for help.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
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Ram
43k
This post does not fit the theme of this forum.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
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Ram
43k
Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
Comment: Kraken2 Custom Database non-deterministic results
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GenoMax
142k
Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
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Pedro
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**I have already tried this code. listSamples with HNSC cancer and smokers. I need at least one supporting material to find out the survi…
Comment: Filter Genome for Specific Sites
by
Anita
• 0
Great, thank you!
Comment: Filter Genome for Specific Sites
by
Anita
• 0
This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
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