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13,376 results • Page
2 of 268
Sort: Rank
Rank
Views
Votes
Replies
1
vote
2
replies
1.6k
views
Seurat CellCycleScoring – confused about the proper order of operations when using SCTransform
CellCycleScoring
SCTransform
Seurat
updated 2 days ago by
Li
• 0 • written 2.3 years ago by
GPM
▴ 10
0
votes
0
replies
106
views
Summary Statistics SNPs not found in Target data
SNP
plink
PRS
updated 2 days ago by
Ram
43k • written 2 days ago by
curious_butterfly
• 0
0
votes
0
replies
110
views
Long reads and fixing of mate-pair issues/marking duplicates with samtools
mate-pair
samtools
alignment
1 day ago by
Zeng Hao
▴ 40
1
vote
4
replies
267
views
Contig assembly task, errors
genetics
contig
assembly
dna
bioinformatics
8 hours ago by
rackbersingh
• 0
1
vote
3
replies
219
views
Help with Biopython for Beginner
Python
ORF
FASTA
Biopython
updated 1 day ago by
GenoMax
142k • written 2 days ago by
cput
• 0
0
votes
0
replies
112
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
2 days ago by
asalimih
▴ 60
0
votes
2
replies
230
views
featureCounts output summary assigned value higher than uniquely mapped reads from HISAT2
RNA-seq
featureCounts
HISAT
updated 1 day ago by
i.sudbery
19k • written 2 days ago by
Prawesh
• 0
0
votes
9
replies
1.5k
views
kinannote software installation problems
kinannote
updated 2 days ago by
Emanoelle
• 0 • written 5.7 years ago by
Elizabeth
▴ 30
0
votes
1
reply
162
views
Obtaining Infinium Methylation450K manifest for hg38
TCGA
hg38
methylation
Illumina
updated 2 days ago by
marco.barr
▴ 100 • written 2 days ago by
elisheva
▴ 120
0
votes
0
replies
97
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway
denovo
updated 2 days ago by
Ram
43k • written 2 days ago by
mathavanbioinfo
▴ 90
1
vote
1
reply
255
views
Seurat V5 integration
Seurat
integration
updated 2 days ago by
Ram
43k • written 5 days ago by
starswillfade
▴ 10
0
votes
2
replies
208
views
Error in plotting PCA plot in seurat
PCA
single-cell
seurat
scRNA
RNA
updated 2 days ago by
Ram
43k • written 2 days ago by
Sumeet
• 0
0
votes
0
replies
114
views
News:
Online course: Introduction to Deep Learning
Python
Deep-Learning
Convolutional-Neural-Network
Machine-Learning
updated 2 days ago by
Ram
43k • written 2 days ago by
carlopecoraro2
★ 2.5k
4
votes
5
replies
3.4k
views
How to compare compare two Sam files to check mapping
alignment
updated 2 days ago by
DavidStreid
▴ 90 • written 6.4 years ago by
madhu.9124
▴ 60
0
votes
2
replies
147
views
How/where can I get fungal mitogenome data for analysis?
fungal
mitogenome
updated 2 days ago by
GenoMax
142k • written 2 days ago by
madders73
• 0
4
votes
2
replies
246
views
How can I analyze normalized expression data?
DEseq2
RNA-seq
2 days ago by
mnx0723
• 0
3
votes
4
replies
4.0k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 2 days ago by
chloek88
• 0 • written 5.5 years ago by
Philipp Bayer
8.4k
3
votes
5
replies
330
views
RNA seq analysis
DESeq
RNA-seq
16 hours ago by
prifa
▴ 10
10
votes
3
replies
295
views
TFs and Gene databases
Transcription-factor
Target
Regulatory-Networks
updated 2 days ago by
b.contreras.moreira
▴ 180 • written 3 days ago by
ijarne
• 0
0
votes
0
replies
137
views
Chance for trained without experience
bio
updated 2 days ago by
ATpoint
82k • written 2 days ago by
shehab
• 0
1
vote
2
replies
180
views
How do I change the title font size in ViolinPlot (Seurat)
Seurat
Violin-Plot
ggplot2
patchwork
2 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
115
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
2 days ago by
Omics data mining
▴ 260
0
votes
2
replies
162
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
2 days ago by
njornet
▴ 20
0
votes
2
replies
189
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 2 days ago by
Adam
▴ 30 • written 2 days ago by
Darya
• 0
0
votes
5
replies
225
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 2 days ago by
Joe
21k • written 2 days ago by
Lemonhope
• 0
0
votes
0
replies
158
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
1 day ago by
Winter
• 0
0
votes
5
replies
276
views
A question about reference genome for creating the consensus sequence
fasta
fa
cram
genome
2 days ago by
me
• 0
2
votes
1
reply
127
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
2 days ago by
analyst
▴ 50
0
votes
0
replies
85
views
Generating .bed file and .map file for polyploid vcf file through plink
bed
polyploid
map
plink
2 days ago by
analyst
▴ 50
0
votes
0
replies
82
views
Blog:
Introduction to The Complete Sequence of a Human Genome
biotech
2 days ago by
usa.cd.genomics
• 0
0
votes
0
replies
87
views
Blog:
Overview of Nanopore Sequencing
biotech
2 days ago by
usa.cd.genomics
• 0
0
votes
0
replies
99
views
meffil.snp.concordance
meffil
methylation
snp_concordance
3 days ago by
kyj222637
• 0
0
votes
1
reply
140
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 2 days ago by
Bastien Hervé
5.3k • written 3 days ago by
sooni
▴ 20
1
vote
5
replies
408
views
HCL database download
HCL
updated 3 days ago by
Ram
43k • written 7 days ago by
sooni
▴ 20
0
votes
1
reply
245
views
barcode of TCR-sequencing
barcode
updated 3 days ago by
mizraelson
▴ 60 • written 10 days ago by
yueli7
▴ 250
0
votes
3
replies
219
views
STAR aligner error
RNA-seq
STAR
slurm
updated 2 days ago by
Ram
43k • written 3 days ago by
M.
▴ 30
0
votes
0
replies
94
views
monocle 3-- Could not get node in small cluster
monocle3
3 days ago by
synat.keam
▴ 100
0
votes
2
replies
193
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
2 days ago by
Nicholas
• 0
1
vote
4
replies
362
views
Understanding STAR output (Aligned.out.sam file)
STAR
paired-end
read
3 days ago by
heelpPlease
• 0
0
votes
7
replies
464
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
updated 2 days ago by
Wayne
★ 2.0k • written 4 days ago by
JACKY
▴ 140
0
votes
0
replies
110
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
3 days ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
462
views
HLA-HD tool for genomic imputation
genomics
imputation
bash
updated 3 days ago by
Javier
• 0 • written 3 months ago by
fra.r.silvestro
▴ 10
0
votes
1
reply
241
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 3 days ago by
GenoMax
142k • written 3 days ago by
Sony
▴ 10
5
votes
5
replies
274
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
3 days ago by
Chris
▴ 280
0
votes
2
replies
207
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 2 days ago by
swbarnes2
14k • written 3 days ago by
ahmad.sajad4541
• 0
1
vote
9
replies
339
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 15 hours ago by
i.sudbery
19k • written 3 days ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
161
views
student
epitranscriptomics
updated 3 days ago by
ATpoint
82k • written 3 days ago by
useriwa
• 0
0
votes
0
replies
107
views
Imputation of missing genotypes
panel
beagle
imputation
3 days ago by
analyst
▴ 50
0
votes
3
replies
169
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 3 days ago by
GenoMax
142k • written 3 days ago by
Assa Yeroslaviz
★ 1.8k
7
votes
1
reply
158
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 3 days ago by
dariober
14k • written 3 days ago by
nhaus
▴ 360
13,376 results • Page
2 of 268
Recent Votes
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
Answer: what is another word for a BLAST "hit"?
Comment: what is another word for a BLAST "hit"?
Comment: what is another word for a BLAST "hit"?
Comment: How can I merge GFF files together to produce a file with gene functions from bo
Comment: Contig assembly task, errors
Comment: Where to get the following bed file?
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Answer: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
use bcftools merge with --force-samples and then use jvarkit https://jvarkit.readthedocs.io/en/latest/VcfFilterJdk/ to replace the no-call …
Answer: In IGV is this a heterogeneous mutation or false call?
by
swbarnes2
14k
Since all the reads that show the alternate allele have to be clipped to align there, I'd say those reads are misaligned. I would say that…
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
GenoMax
142k
> Here's a few lines from the head of the raw fastq If your files are actually compressed (as their names suggest) then you should not be …
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
GenoMax
142k
If you added the `\` before the `+` then there is no need for it. It makes it appear that the sequences are not in proper fastq format. Ple…
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
Mensur Dlakic
★ 27k
This seems to be the same unanswered question as before, except that its description is split over two threads. You are now forcing us to r…
Answer: what is another word for a BLAST "hit"?
by
dec986
▴ 380
I'll probably go with "matches" even though it doesn't sound as good as just "hit"
Comment: what is another word for a BLAST "hit"?
by
bk11
★ 2.4k
> hits from BLAST hits sequences
Comment: what is another word for a BLAST "hit"?
by
Pierre Lindenbaum
161k
> is there a synonym for hits from BLAST? alignment
Comment: How are score_weights calculated in this code?
by
Ram
43k
Is this ALL the context you can give us?
Comment: Genome Assembly task + Protein Translation, assignment advice on a question
by
Ram
43k
Where did you copy-paste this from? It looks like an assignment question.
Comment: Contig assembly task, errors
by
rackbersingh
• 0
Hi Phillip, Thanks for sharing you knowledge and funnily enough this really was an amplitude test, but anyways your sharing of knowledge h…
Comment: Can I readmap short reads to rDNA references?
by
GenoMax
142k
If these are short reads and the organisms are related then you are going to have a difficult time classifying the reads.
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by
GenoMax
142k
With a large dataset it is always best to do the search locally (or in the cloud, if you don't have necessary hardware available locally).
Comment: Truncated metadata file report from ENA Portal API
by
Giulia
• 0
Thank you so much for your hint! I'll look into this!
Comment: How to convert Haps file to vcf file?
by
curious
▴ 750
unzip haps then: bin/shapeit \ -convert \ --input-haps {haps_prefix} \ --thread {cpus} \ --output-…
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