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32 results • Page
1 of 1
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0
votes
0
replies
12
views
vdjtools
vdjtools
22 minutes ago by
yueli7
▴ 250
0
votes
0
replies
10
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
27 minutes ago by
Biostar
2.7k
0
votes
0
replies
19
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
1 hour ago by
Antonio
• 0
0
votes
0
replies
25
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 2 hours ago by
Ram
43k • written 2 hours ago by
sidrah.maryam
▴ 50
0
votes
0
replies
21
views
Normalizing AMR gene count data
abundance
RGI
updated 1 hour ago by
Ram
43k • written 2 hours ago by
arshad1292
▴ 100
1
vote
1
reply
60
views
error in R code
R
updated 1 hour ago by
Ram
43k • written 3 hours ago by
snajafy
• 0
0
votes
0
replies
39
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 2 hours ago by
Ram
43k • written 3 hours ago by
MICOS
• 0
0
votes
0
replies
39
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 5 hours ago by
Pierre Lindenbaum
161k • written 5 hours ago by
sarumonsus
• 0
0
votes
2
replies
191
views
Tissue-specific DEG analysis with DEseq2
DEseq2
RNA-seq
DEG
R
45 minutes ago by
M.
▴ 30
0
votes
0
replies
56
views
How to implement an IGV to streamlit app?
python
streamlit
igv
6 hours ago by
avigail.shnaider
• 0
1
vote
5
replies
169
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 1 hour ago by
Ram
43k • written 7 hours ago by
snajafy
• 0
0
votes
2
replies
148
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
updated 2 hours ago by
GenoMax
142k • written 18 hours ago by
mropri
▴ 150
0
votes
1
reply
253
views
DMRcate ranges liftover hg19 to hg38
DMRcate
Liftover
DMR
Methylation
annotation
updated 13 hours ago by
aaron.stevens
• 0 • written 12 weeks ago by
sativus
▴ 20
2
votes
2
replies
172
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB
protein
STRING-DB-API
15 hours ago by
brandon
• 0
0
votes
0
replies
81
views
Gene ontology and homologs
gene-ontology
updated 1 hour ago by
Ram
43k • written 19 hours ago by
beshka194
• 0
0
votes
0
replies
74
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
21 hours ago by
KHURRAM SHAHZAD
• 0
1
vote
5
replies
271
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 47 minutes ago by
Ram
43k • written 23 hours ago by
snajafy
• 0
0
votes
0
replies
77
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
22 hours ago by
Christopher
• 0
4
votes
1
reply
183
views
LD-prune variants while maintaining a list of SNPs
snp
vcf
plink
filtering
independent
updated 6 hours ago by
zx8754
11k • written 1 day ago by
Jautis
▴ 560
3
votes
4
replies
333
views
Design matrix Differential expression analysis
RNA-seq
Differential-expression
30 minutes ago by
SHN
▴ 40
0
votes
1
reply
216
views
creating batch colum for batch correction
batch-correction
combat
4 hours ago by
Expert
▴ 10
0
votes
1
reply
171
views
Help with DGEList function
DGEList
R
updated 16 hours ago by
marco.barr
▴ 90 • written 2 days ago by
Natali
• 0
0
votes
1
reply
173
views
Quetion regarding WGCNA
WGCNA
Network-construction
updated 7 hours ago by
andres.firrincieli
3.6k • written 2 days ago by
deepak180001
• 0
1
vote
3
replies
257
views
TaxID mapping file
annotation
blobtools
RNAseq
decontamination
transcriptomes
20 hours ago by
Lada
▴ 30
1
vote
0
replies
136
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
updated 6 hours ago by
zx8754
11k • written 2 days ago by
Emilie
▴ 10
9
votes
10
replies
586
views
High Malat-1 expression in single cell data
single-cell
updated 2 hours ago by
t.montserrat.ayuso
▴ 10 • written 7 days ago by
carolofharvest
▴ 30
1
vote
3
replies
273
views
ERROR When Using Ensembl Plants Biomart Wget API
biomart
plant
ensembl
9 hours ago by
Dora
▴ 10
0
votes
2
replies
146
views
Gene Specific coverage from WGS data
linux
WGS
Bioinformatics
SARS
CoV2
updated 1 hour ago by
GenoMax
142k • written 6 days ago by
Adyasha
• 0
1
vote
10
replies
830
views
error to run rnammer
phylogenomics
rRNA_extraction
rnammer
updated 7 hours ago by
antonio.spl
• 0 • written 3 months ago by
microorganism_001
▴ 30
5
votes
6
replies
1.8k
views
agilent human all exon sureselct v7 bed file
exon
human
bed
v7
agilent
all
sureselect
updated 21 hours ago by
MiladAD
▴ 10 • written 24 months ago by
soheil
• 0
1
vote
11
replies
5.5k
views
Truncated Bam Error
R
next-gen
sequencing
software error
updated 10 hours ago by
guanghao
• 0 • written 6.1 years ago by
vivekruhela
▴ 20
4
votes
6
replies
3.8k
views
How to interpret DEXseq results in therms of significance
DEXseq
RNA-Seq
exon
updated 34 minutes ago by
Sara
▴ 30 • written 6.7 years ago by
Lila M
★ 1.2k
32 results • Page
1 of 1
Recent Votes
DEXSeq multiple time points
How to find the most frequent alternative-splicing event from DEXSEQ data?
Comment: Design matrix Differential expression analysis
UMI-Tools 0.5, now with tools for cell barcoded scRNA-seq
Comment: install.packages("imudata")
Answer: Can I merge Hi-C fastq files from different lanes?
Answer: Interpretation of output from MiXCR TCR sequencing
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sidrah.maryam
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gubrins
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Recent Replies
Comment: Design matrix Differential expression analysis
by
SHN
▴ 40
Got it, thank you for your response. SN
Comment: How to interpret DEXseq results in therms of significance
by
Sara
▴ 30
Hi, I used write.table(as.data.frame(DEXSeqResults(MyObj)), "Results.tsv", quote=FALSE, sep="\t", dec=".") to save the result but I recei…
Comment: Tissue-specific DEG analysis with DEseq2
by
M.
▴ 30
Can I ask what do you exactly mean by same experiment? If you are talking about the same donor and the same procedure, unfortunately, not a…
Comment: install package: package ‘gmwm’ is not available for this version of R
by
Ram
43k
Find someone with computer skills near you and consult them. From your posts on the forum, it's clear that you need help at a level that we…
Comment: Gene Specific coverage from WGS data
by
GenoMax
142k
This is not going to work no matter what program you use since the chromosome identifiers in your GTF (`MN908947.3 `) do not match your BA…
Comment: install.packages("imudata") - package ‘imudata’ is not available for this versio
by
Ram
43k
Read the answers in the post, understand them and try to implement them.
Comment: High Malat-1 expression in single cell data
by
t.montserrat.ayuso
▴ 10
Just using the normalized expression of Malat1 works.
Comment: Can I merge Hi-C fastq files from different lanes?
by
Winter
• 0
Awesome, thank you for the concise and straight-forward answer!
Comment: error in R code
by
ATpoint
82k
Look, before you keep posting these sorts of questions and might gross of users, please read and follow https://www.biostars.org/p/357878/ …
Comment: Gene Specific coverage from WGS data
by
1769mkc
★ 1.2k
"Also if is there any other quick way to find gene specific coverage" can you give some example so that its bit more clear what do you mean…
Answer: Tissue-specific DEG analysis with DEseq2
by
ATpoint
82k
I assume that all data are from the same experiment, without batch effects and can thus be quantitiatively compared: Many ways to do thi…
Comment: install.packages("imudata") - package ‘imudata’ is not available for this versio
by
snajafy
• 0
I am facing the same problem and I don't know how to solve the problem,....
Comment: install.packages("imudata")
by
zx8754
11k
[How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning?](https://stackoverflow.com/q/25721884/680068)
Answer: install.packages("imudata")
by
ATpoint
82k
Welcome to this community. Please learn the most important lesson right away which is reading answers and learning from it. Users gave you …
Comment: install.packages("imudata")
by
marco.barr
▴ 90
You can install from github directly. Many R packages are not present in the CRAN repository or in Bioconductor( from Biocmanager). Also re…
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