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116,829 results • Page
2 of 2337
Sort: Rank
Rank
Views
Votes
Replies
1
vote
2
replies
163
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
1 day ago by
robert.flynn.21
• 0
1
vote
1
reply
201
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 1 day ago by
Michael
54k • written 1 day ago by
Guillermo
• 0
1
vote
5
replies
306
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 11 hours ago by
Michael
54k • written 1 day ago by
qwertyuiop26
• 0
0
votes
1
reply
155
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 1 day ago by
ATpoint
82k • written 2 days ago by
MAPK2
▴ 40
0
votes
2
replies
205
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 1 day ago by
Xiaofen
• 0 • written 1 day ago by
toddknutson
▴ 60
0
votes
1
reply
125
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
updated 1 day ago by
LChart
3.9k • written 1 day ago by
David
• 0
1
vote
2
replies
159
views
Where to get the following bed file?
WES
bed
reference
file
updated 1 day ago by
GenoMax
142k • written 1 day ago by
wyuan37
• 0
0
votes
0
replies
102
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
1 day ago by
Scott McKay
▴ 30
0
votes
0
replies
101
views
Cellphonedb results
cpdb
visulization
cellphonedb
1 day ago by
piotto
▴ 20
0
votes
0
replies
118
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
1 day ago by
belloy
• 0
0
votes
3
replies
219
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 1 day ago by
swbarnes2
14k • written 2 days ago by
Ngrin
• 0
1
vote
6
replies
674
views
anRichment is missing
WGCNA
anRichment
updated 2 days ago by
GenoMax
142k • written 5 months ago by
michael.flower.14
▴ 180
1
vote
1
reply
193
views
Gene ontology and homologs
gene-ontology
updated 2 days ago by
geneontologyhelp
▴ 400 • written 3 days ago by
beshka194
• 0
1
vote
2
replies
209
views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
R
updated 2 days ago by
zx8754
11k • written 2 days ago by
snajafy
• 0
0
votes
0
replies
106
views
Cox Model with interaction item interpretation
Cox
2 days ago by
Bine
▴ 60
0
votes
0
replies
93
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
2 days ago by
Javier
• 0
1
vote
7
replies
460
views
Question regarding WGCNA
WGCNA
Network-construction
updated 34 minutes ago by
Ram
43k • written 4 days ago by
deepak
• 0
0
votes
0
replies
100
views
vdjtools
vdjtools
2 days ago by
yueli7
▴ 250
1
vote
0
replies
135
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
2 days ago by
Biostar
2.7k
0
votes
1
reply
197
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 1 day ago by
andres.firrincieli
3.6k • written 2 days ago by
Antonio
• 0
0
votes
0
replies
111
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 2 days ago by
Ram
43k • written 2 days ago by
sidrah.maryam
▴ 50
0
votes
0
replies
97
views
Normalizing AMR gene count data
abundance
RGI
updated 2 days ago by
Ram
43k • written 2 days ago by
arshad1292
▴ 100
0
votes
0
replies
110
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 2 days ago by
Pierre Lindenbaum
161k • written 2 days ago by
sarumonsus
• 0
1
vote
2
replies
297
views
Tissue-specific DEG analysis with DEseq2
DEseq2
RNA-seq
DEG
R
2 days ago by
M.
▴ 30
0
votes
0
replies
113
views
How to implement an IGV to streamlit app?
python
streamlit
igv
2 days ago by
avigail.shnaider
• 0
1
vote
5
replies
291
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 2 days ago by
Ram
43k • written 2 days ago by
snajafy
• 0
0
votes
2
replies
259
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
updated 2 days ago by
GenoMax
142k • written 3 days ago by
mropri
▴ 150
0
votes
1
reply
298
views
DMRcate ranges liftover hg19 to hg38
DMRcate
Liftover
DMR
Methylation
annotation
updated 2 days ago by
aaron.stevens
• 0 • written 3 months ago by
sativus
▴ 20
2
votes
2
replies
227
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB
protein
STRING-DB-API
2 days ago by
brandon
• 0
0
votes
0
replies
123
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
3 days ago by
KHURRAM SHAHZAD
• 0
1
vote
5
replies
362
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 2 days ago by
Ram
43k • written 3 days ago by
snajafy
• 0
0
votes
0
replies
112
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
3 days ago by
Christopher
• 0
4
votes
1
reply
231
views
LD-prune variants while maintaining a list of SNPs
snp
vcf
plink
filtering
independent
updated 2 days ago by
zx8754
11k • written 3 days ago by
Jautis
▴ 560
2
votes
2
replies
315
views
Association study using SNP data
Association
Allele
Parentage
SNP
3 days ago by
drajangirija
• 0
0
votes
0
replies
108
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
3 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
115
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
3 days ago by
DGTool
• 0
0
votes
1
reply
183
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 2 days ago by
bk11
★ 2.4k • written 3 days ago by
Yoosef
▴ 60
0
votes
1
reply
491
views
Job:
Seeking Bioinformatics/Drug Design Opportunities - PhD in Pharmacology with Experience in RNA-seq, CADD & Deep Learning Molecular Generation
search
job
updated 3 days ago by
GenoMax
142k • written 3 days ago by
tulip
• 0
3
votes
4
replies
411
views
Design matrix Differential expression analysis
RNA-seq
Differential-expression
updated 1 day ago by
Gordon Smyth
★ 7.1k • written 4 days ago by
SHN
▴ 40
4
votes
2
replies
259
views
GRCh38.gmap file
gnomix
gmap
3 days ago by
lorena9132
▴ 10
2
votes
3
replies
819
views
Issues with Mixture file when using CIBERSORTx
Deconvolution
CIBERSORTx
updated 4 days ago by
vjanve
• 0 • written 7 months ago by
mateomejias
• 0
0
votes
1
reply
257
views
creating batch colum for batch correction
batch-correction
combat
2 days ago by
Expert
▴ 10
1
vote
4
replies
356
views
Segmentation error while using a tool
smalt
updated 4 days ago by
Mensur Dlakic
★ 27k • written 4 days ago by
Ruqaiya
• 0
0
votes
1
reply
213
views
Help with DGEList function
DGEList
R
updated 2 days ago by
marco.barr
▴ 90 • written 4 days ago by
Natali
• 0
0
votes
0
replies
153
views
Homer motif analysis
Homer
4 days ago by
daffodil
▴ 10
1
vote
2
replies
1.1k
views
News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
3 days ago by
Zhenyu Zhang
★ 1.2k
2
votes
1
reply
295
views
Force PLINK2 to neglect chrX as the sex chromosome
PLINK2
updated 4 days ago by
chrchang523
10k • written 8 days ago by
8armed
▴ 10
0
votes
5
replies
348
views
Easy way to find out which allele is minor allele from bed file?
plink
updated 4 days ago by
chrchang523
10k • written 5 days ago by
curious
▴ 750
0
votes
1
reply
206
views
visualize GSEA
barplot
RNA-seq
GSEA
enrichment
updated 4 days ago by
Ram
43k • written 5 days ago by
Rob
▴ 170
0
votes
1
reply
200
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 4 days ago by
GenoMax
142k • written 5 days ago by
Ximena
• 0
116,829 results • Page
2 of 2337
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How to get number of characters (nucleotides) in fasta file
Answer: How can I analyze normalized expression data?
A: How to append the cell barcode and UMI information to the fastq header in paired
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Answer: TFs and Gene databases
Answer: How can I analyze normalized expression data?
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Comment: kinannote software installation problems
by
Emanoelle
• 0
Hey, I know it's been 5 years but I have the same issue. When I run the test the software is unable to perform and always deliver the follo…
Comment: STAR aligner error
by
Ram
43k
If they can't help you, we probably can't do much either. But we can optimize your STAR command. BAM SortedByCoordinate is the worst settin…
Answer: Obtaining Infinium Methylation450K manifest for hg38
by
marco.barr
▴ 90
Hi, you can check it from github here: [https://zwdzwd.github.io/InfiniumAnnotation][1]. I don't know if this is what you are looking fo…
Comment: RNA seq analysis
by
ATpoint
82k
It makes absolutely no sense to conduct such an analysis. I strongly discourage you to even start with it. Results will be utterly nonsense…
Comment: Differentail gene expression results
by
swbarnes2
14k
Cross-posted: https://support.bioconductor.org/p/9158194/
Answer: Seurat V5 integration
by
Bastien Hervé
5.3k
It will depend on your context and question. I guess you will want to compare gene expression between your conditions within cell types …
Answer: Error in plotting PCA plot in seurat
by
Adam
▴ 30
You get this error when you try to compare two data frames that have different dimensions. Try using the traceback() command to figure out …
Comment: Applying the metacell2 algorithm using python
by
Wayne
★ 2.0k
Sorry, this was supposed to be a comment appended to the chain above. I didn't mean to post as an answer.
Comment: Exploring Diet Effects in Single-Cell RNA Sequencing
by
Adam
▴ 30
> when I looked at the expression of aging marker genes, I noticed that diets sequenced in the same batch appeared more similar. How simil…
Answer: How to compare compare two Sam files to check mapping
by
DavidStreid
▴ 90
Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
Answer: How/where can I get fungal mitogenome data for analysis?
by
alex.zaccaron
▴ 410
The best repository is probably NCBI Organelle Resources. You can search by taxonomy and download their mt genomes. Check it out for fungi…
Answer: How/where can I get fungal mitogenome data for analysis?
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GenoMax
142k
Good place to start looking: https://www.ncbi.nlm.nih.gov/genome/organelle/ Mitochondrial genomes may also be included in full genomes so …
Comment: Correlating Bulk Differential Expression with quantitative
by
Nicholas
• 0
Thank you! I will give it a shot
Answer: How can I analyze normalized expression data?
by
Bastien Hervé
5.3k
This has been issued a dozen times before. Have a look at Limma package. https://support.bioconductor.org/p/126817/ https://support.bioco…
Comment: Error in plotting PCA plot in seurat
by
Bastien Hervé
5.3k
Without your code, it is impossible to make any statement. Please provide the code generating that issue. By googling, here is a [similar …
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