2 days ago by
Brian Bushnell
20k
0
votes
3
replies
354
views
0
votes
0
replies
350
views
3
votes
4
replies
350
views
0
votes
4
replies
343
views
4
votes
6
replies
336
views
1
vote
3
replies
324
views
2
votes
6
replies
324
views
4 days ago by
anikcropscience
▴
230
1
vote
3
replies
322
views
updated 3 days ago by
Jeremy
▴
910
•
written 4 days ago by
Mohamed Samir
▴
30
1
vote
4
replies
321
views
2
votes
4
replies
318
views
1
vote
4
replies
317
views
1
vote
2
replies
315
views
2
votes
3
replies
309
views
2
votes
5
replies
306
views
0
votes
3
replies
306
views
updated 5 days ago by
colindaven
6.4k
•
written 7 days ago by
Bjorn
•
0
0
votes
6
replies
289
views
updated 4 days ago by
ATpoint
82k
•
written 5 days ago by
machaalani29
•
0
1
vote
4
replies
287
views
5 days ago by
shpak.max
▴
50
1
vote
3
replies
282
views
updated 2 days ago by
Bastien Hervé
5.3k
•
written 3 days ago by
Sara
▴
30
1
vote
2
replies
279
views
2
votes
4
replies
279
views
4 days ago by
Arton
▴
10
0
votes
1
reply
270
views
updated 4 days ago by
韩雨
•
0
•
written 5 weeks ago by
solomoncharles77
▴
90
0
votes
3
replies
266
views
updated 6 days ago by
marco.barr
▴
130
•
written 7 days ago by
Mohamed Samir
▴
30
2
votes
3
replies
261
views
1
vote
2
replies
258
views
0
votes
3
replies
254
views
0
votes
1
reply
253
views
0
votes
5
replies
252
views
0
votes
4
replies
251
views
6 days ago by
Zhenyu Zhang
★
1.2k
2
votes
4
replies
251
views
0
votes
2
replies
248
views
1
vote
2
replies
247
views
updated 6 days ago by
colindaven
6.4k
•
written 7 days ago by
Dr.
•
0
0
votes
4
replies
245
views
1
vote
2
replies
242
views
1
vote
3
replies
237
views
4
votes
1
reply
235
views
0
votes
3
replies
233
views
3
votes
3
replies
230
views
0
votes
4
replies
226
views
4 days ago by
reza
▴
300
4
votes
2
replies
219
views
1
vote
2
replies
218
views
3
votes
2
replies
218
views
0
votes
3
replies
217
views
2
votes
0
replies
217
views
0
votes
2
replies
216
views
5
votes
3
replies
214
views
updated 5 days ago by
GenoMax
142k
•
written 5 days ago by
Christopher
▴
10
0
votes
2
replies
213
views
8 hours ago by
marco.barr
▴
130
1
vote
2
replies
211
views
updated 1 day ago by
LauferVA
4.2k
•
written 2 days ago by
carolofharvest
▴
40
1
vote
3
replies
210
views
updated 5 days ago by
Pierre Lindenbaum
162k
•
written 6 days ago by
mrk
•
0
0
votes
2
replies
209
views
updated 10 hours ago by
a.alnawfal.1992
▴
260
•
written 4 days ago by
adarsh_pp
▴
40
1
vote
3
replies
208
views
Recent Votes
Recent Locations •
All
Brazil, just now
Israel, just now
Canada, 7 minutes ago
New Zealand, 13 minutes ago
Norway, 21 minutes ago
Finland, 24 minutes ago
United Kingdom, 26 minutes ago
Recent Awards •
All
Popular Question to
Panos
★
1.8k
Popular Question to
gubrins
▴
310
Popular Question to
jjmmii
•
0
Popular Question to
User000
▴
700
Recent Replies
Comment: Functional enrichment analysis for unique gene IDs
by
Pegasus
▴
100
Since the locus-tags are unclassified, I used the CDS instead of the locus-tags to retrive their ensembl IDs using ensembl bacteria website…
Comment: samtools mpileup error - 1 samples in 1 input files
by
Damla
•
0
Could you find a solution to your problem?
Comment: txt file to bigwig
by
sogand
•
0
Hi all,
I am new to these kind of analysis and appreciate any guidance on my issue here:
I have analyzed peakcalling .txt files that are r…
Answer: Help me with Heatmap
by
MolGeek
▴
50
Hello!
So, what is the correct design ?
You will have to ask yourself, what do you want to compare? WT vs mut? If so it will be strain. 2…
Answer: Help me with simple data for RNA seq
by
swbarnes2
14k
1) you have to say what question you are actually asking. There are few different designs that would address different questions.
2) work…
Comment: identify the coordinate for coding and non_coding region.
by
Ghada
•
0
mmmm I am not sure. This is how I generate my consnsus sequence
# Get consensus fastq file
samtools mpileup -uf KT992094.1.fasta…
Comment: identify the coordinate for coding and non_coding region.
by
GenoMax
142k
Why do you have those N's at the beginning of the sequence? If the remainder of the sequence matches 100% then the initial N's may be wrong…
Answer: Salmon vs Kallisto vs RSEM
by
Rob
6.6k
It's nice that you've gone ahead and done some analysis of these results and their differences on your data yourself. These more general qu…
Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
by
Mike Smith
★
2.0k
In this location there is an "entrez" file which maps ensembl IDs to Entrez. It's probably as definitive as you're going to find:
https://…
Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
by
Anya
•
0
Tried it just recently with almost the same results. 456 out of 496 IDs for protein-coding genes returned as "NA" even though I can see NCB…
Answer: Download All The Bacterial Genomes From Ncbi
by
2284046470
•
0
wget https://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/assembly_summary.txt
awk -F '\t' '{if($12=="Complete Genome" && $11=…
Answer: How do i calculate the mean of triplicates in a data.frame based on pattern?
by
dariober
14k
I'm a happy user of [data.table](https://rdatatable.gitlab.io/data.table/):
```
library(data.table)
dat <- structure(list(sgrna = c("Cont…
Comment: How do i calculate the mean of triplicates in a data.frame based on pattern?
by
Assa Yeroslaviz
★
1.9k
I know it can be done with something like that:
```
cbind(p767.AM = (rowMeans(p767[,2:4])),
p767.MM = (rowMeans(p767[,5:7]…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
ATpoint
82k
Why is your `GeneName` column in mapped a mix of Ensembl IDs and gene names? What Jared wants to say is that during the preprocessing you s…
Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
by
GenoMax
142k
> only give me partial results
It is possible that not every Ensembl ID is going to convert to Entrez ID.
Have you tried:
https://www.b…
Traffic: 1650 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6