Limit : this week
all time today this week this month this year
181 results • Page 2 of 4
Sort: replies
Rank Views Votes Replies
1
vote
3
replies
280
views
Does comparing two different groups to a common third group introduce bias in the analysis?
DESEQ RNAseq
updated 3 days ago by 82k • written 3 days ago by • 0
1
vote
3
replies
234
views
DiffBind: no peaks in DBA
MACS2 DiffBind ChIP-seq
updated 3 days ago by ★ 16k • written 3 days ago by ▴ 10
3
votes
3
replies
315
views
What analysis suitable to identify similarly expressed genes between two samples (treated vs untreated). Contrary to DGE analysis,
Gene-Expression RNA NOISeq DGE
updated 3 days ago by 82k • written 4 days ago by • 0
1
vote
3
replies
235
views
Odd alignment question/finding
Alignment
updated 3 days ago by ★ 2.1k • written 4 days ago by • 0
0
votes
3
replies
293
views
Landmark gene selection in L1000.
L1000 landmark-gene cmap
updated 6 days ago by 142k • written 6 days ago by • 0
2
votes
3
replies
781
views
Issues with Mixture file when using CIBERSORTx
Deconvolution CIBERSORTx
updated 1 day ago by • 0 • written 7 months ago by • 0
1
vote
3
replies
259
views
TaxID mapping file
annotation blobtools RNAseq decontamination transcriptomes
21 hours ago by Lada ▴ 30
1
vote
3
replies
307
views
DESeq2 processing problems
deseq2 R
updated 4 days ago by 82k • written 5 days ago by • 0
0
votes
3
replies
413
views
why renaming Idents in Seurat object doesn't work?
Seurat RenameIdents R
5 days ago by Assa Yeroslaviz ★ 1.8k
5
votes
3
replies
282
views
6 follow
Integrate transcriptomic data and proteomics data.
OMICS
updated 6 days ago by ★ 1.2k • written 6 days ago by • 0
1
vote
3
replies
251
views
Bedtools merge minimum overlap?
bedtools genomics
updated 3 days ago by 35k • written 3 days ago by • 0
0
votes
3
replies
285
views
KEGG Pathways
r RNA-seq
updated 5 days ago by 43k • written 6 days ago by • 0
1
vote
3
replies
275
views
ERROR When Using Ensembl Plants Biomart Wget API
biomart plant ensembl
10 hours ago by Dora ▴ 10
1
vote
3
replies
280
views
What does 'bundle_uuid' refer to in this metadata sheet?
SRA illumina GEO metadata
updated 5 days ago by 142k • written 5 days ago by • 0
0
votes
3
replies
744
views
Why cd-hit-est not work when sequence identity threshold<0.95？
genome cluster sequence
updated 6 days ago by • 0 • written 21 months ago by • 0
2
votes
3
replies
273
views
Help with choosing a model species for Augustus for a de novo assembled genome.
augustus annotation assembly genome
updated 2 days ago by ★ 1.9k • written 3 days ago by ▴ 30
0
votes
3
replies
220
views
Software to separate reads from different individuals
software development nanopore
updated 6 days ago by 142k • written 6 days ago by ▴ 20
0
votes
3
replies
340
views
CWl and toil singularity image e.g busybox? Thank you
toil singularity
updated 6 days ago by 43k • written 4 months ago by • 0
3
votes
2
replies
383
views
Extract protein sequence
fasta alignment blast
5 days ago by anna ▴ 20
4
votes
2
replies
307
views
How to use limma to find differentially expressed genes in response to a continuous variable
limma voom R
6 days ago by pairedttest ▴ 10
0
votes
2
replies
206
views
What should I consider as FASTA for dataset?
PDB FASTA
6 days ago by Nafi • 0
2
votes
2
replies
201
views
MA plot of shrunken fold change
MA-plot Deseq2
updated 6 days ago by 82k • written 6 days ago by • 0
1
vote
2
replies
228
views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
Arabidopsis-thaliana gtf reference-genome
updated 5 days ago by 43k • written 6 days ago by • 0
2
votes
2
replies
274
views
p-value in CIBERSORT
CIBERSORT p-value
5 days ago by michelafrancesconi9 ▴ 20
1
vote
2
replies
290
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast pssm
5 days ago by Nafi • 0
1
vote
2
replies
251
views
POSSUM not working due to incompatible pssm file
fasta pse-pssm pssm POSSUM
4 days ago by rianna.collins • 0
0
votes
2
replies
190
views
Base Quality Score Recalibration with different reference genome
SNPs GATK BQSR RNA-seq
3 days ago by dtnondorf • 0
0
votes
2
replies
727
views
homer not configured properly
Homer makeTagDirectory
updated 3 days ago by • 0 • written 23 months ago by • 0
1
vote
2
replies
280
views
read length in structural variant calling
nanopore SV QC ONT variant
3 days ago by eebloom ▴ 80
1
vote
2
replies
235
views
RNA-seq data for deep learning classification
rna-seq
3 days ago by yahn • 0
2
votes
2
replies
208
views
Raw counts using stringtie
stringtie RNA-seq
updated 2 days ago by 142k • written 3 days ago by • 0
2
votes
2
replies
1.8k
views
Parametric or non-parametric tests for qPCR significance testing between treatments?
qPCR statistical test parametric non-parametric
updated 2 days ago by ▴ 210 • written 3.8 years ago by ▴ 40
0
votes
2
replies
237
views
Downloading older version of a tool
Alignment tools
2 days ago by Ruqaiya • 0
2
votes
2
replies
2.6k
views
Pindel Segmentation Fault Error
pindel
updated 2 days ago by • 0 • written 10.2 years ago by ▴ 20
2
votes
2
replies
217
views
Analysis of intronic reads included scRNA-seq data
single-cell
updated 1 day ago by 43k • written 3 days ago by ▴ 30
4
votes
2
replies
211
views
GRCh38.gmap file
gnomix gmap
1 day ago by lorena9132 ▴ 10
1
vote
2
replies
1.1k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
1 day ago by Zhenyu Zhang ★ 1.2k
1
vote
2
replies
225
views
Downloading full alignments from Pfam
pfam
1 day ago by bef1 • 0
2
votes
2
replies
266
views
Association study using SNP data
Association Allele Parentage SNP
1 day ago by drajangirija • 0
2
votes
2
replies
175
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB protein STRING-DB-API
16 hours ago by brandon • 0
0
votes
2
replies
150
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
updated 2 hours ago by 142k • written 19 hours ago by ▴ 150
0
votes
2
replies
151
views
Gene Specific coverage from WGS data
linux WGS Bioinformatics SARS CoV2
updated 2 hours ago by 142k • written 6 days ago by • 0
0
votes
2
replies
192
views
Tissue-specific DEG analysis with DEseq2
DEseq2 RNA-seq DEG R
1 hour ago by M. ▴ 30
0
votes
2
replies
182
views
Quetion regarding WGCNA
WGCNA Network-construction
7 minutes ago by deepak180001 • 0
1
vote
1
reply
232
views
Adjust pvalue in R with different approach give me all different outcome
statistics R p-value
updated 5 days ago by 43k • written 5 days ago by ▴ 60
0
votes
1
reply
585
views
Basic stats in hierfstat
Fst stats hierfstat
updated 4 days ago by • 0 • written 18 months ago by • 0
0
votes
1
reply
206
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK recalibration
updated 4 days ago by 142k • written 4 days ago by ▴ 30
0
votes
1
reply
186
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
updated 4 days ago by ▴ 30 • written 6 days ago by • 0
0
votes
1
reply
151
views
Mutect2 for mitochondria variant discovery
mutect2 mitochondria
updated 4 days ago by 43k • written 4 days ago by • 0
0
votes
1
reply
221
views
How to find overlap of clusters in two seurat porject
clustering seurat
updated 4 days ago by ▴ 30 • written 5 days ago by • 0
181 results • Page 2 of 4
Recent Votes
A: Meme-Tools: Bit score
Meme-Tools: Bit score
Meme-Tools: Bit score
Comment: error in R code
DEXSeq multiple time points
How to find the most frequent alternative-splicing event from DEXSEQ data?
Comment: Design matrix Differential expression analysis
Recent Locations • All
Belgium, just now
Bologna, 1 minute ago
Munich, 3 minutes ago
Germany, 4 minutes ago
United States, 6 minutes ago
United States, 6 minutes ago
Canada, 7 minutes ago
Recent Awards • All
Popular Question to sidrah.maryam ▴ 50
Popular Question to gubrins ▴ 290
Popular Question to arshad1292 ▴ 100
Popular Question to ahmad mousavi ▴ 800
Popular Question to njornet ▴ 20
Supporter to simplitia ▴ 130
Scholar to Pierre Lindenbaum 161k
Recent Replies
Answer: Quetion regarding WGCNA by deepak180001 • 0
Thank you for your reply andres.firrincieli. I have attached the PCA plot of the expression data used in the WGCNA. ![enter imag…
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Got it, thank you for your response. SN
Comment: How to interpret DEXseq results in therms of significance by Sara ▴ 30
Hi, I used write.table(as.data.frame(DEXSeqResults(MyObj)), "Results.tsv", quote=FALSE, sep="\t", dec=".") to save the result but I recei…
Comment: Tissue-specific DEG analysis with DEseq2 by M. ▴ 30
Can I ask what do you exactly mean by same experiment? If you are talking about the same donor and the same procedure, unfortunately, not a…
Comment: install package: package ‘gmwm’ is not available for this version of R by Ram 43k
Find someone with computer skills near you and consult them. From your posts on the forum, it's clear that you need help at a level that we…
Comment: Gene Specific coverage from WGS data by GenoMax 142k
This is not going to work no matter what program you use since the chromosome identifiers in your GTF (`MN908947.3 `) do not match your BA…
Comment: install.packages("imudata") - package ‘imudata’ is not available for this versio by Ram 43k
Read the answers in the post, understand them and try to implement them.
Comment: High Malat-1 expression in single cell data by t.montserrat.ayuso ▴ 10
Just using the normalized expression of Malat1 works.
Comment: Can I merge Hi-C fastq files from different lanes? by Winter • 0
Awesome, thank you for the concise and straight-forward answer!
Comment: error in R code by ATpoint 82k
Look, before you keep posting these sorts of questions and might gross of users, please read and follow https://www.biostars.org/p/357878/ …
Comment: Gene Specific coverage from WGS data by 1769mkc ★ 1.2k
"Also if is there any other quick way to find gene specific coverage" can you give some example so that its bit more clear what do you mean…
Answer: Tissue-specific DEG analysis with DEseq2 by ATpoint 82k
I assume that all data are from the same experiment, without batch effects and can thus be quantitiatively compared: Many ways to do thi…
Comment: install.packages("imudata") - package ‘imudata’ is not available for this versio by snajafy • 0
I am facing the same problem and I don't know how to solve the problem,....
Comment: install.packages("imudata") by zx8754 11k
[How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning?](https://stackoverflow.com/q/25721884/680068)
Answer: install.packages("imudata") by ATpoint 82k
Welcome to this community. Please learn the most important lesson right away which is reading answers and learning from it. Users gave you …
Traffic: 2647 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6