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30 results • Page
1 of 1
Sort: Votes
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Views
Votes
Replies
64
votes
25
replies
57k
views
22 follow
Download All The Bacterial Genomes From Ncbi
ncbi
updated 8 hours ago by
GenoMax
142k • written 11.4 years ago by
rehma.ar
▴ 290
8
votes
10
replies
3.2k
views
8 follow
Venter Genome Vcf
vcf
updated 5 hours ago by
Jeremy Leipzig
22k • written 10.1 years ago by
win
▴ 980
3
votes
10
replies
5.2k
views
6 follow
txt file to bigwig
MEME
bigwig
updated 4 hours ago by
ATpoint
82k • written 8.6 years ago by
tanni93
▴ 50
3
votes
4
replies
203
views
Invalid CIGAR after using bam clipOverlap
validatesamfile
cigar
bam
clipoverlap
18 hours ago by
MboiTui
▴ 20
3
votes
3
replies
806
views
Cut&Run and heatmap
and
bowtie2
MACS2
updated 6 hours ago by
sogand
• 0 • written 13 months ago by
qudrat.nii
▴ 10
2
votes
4
replies
1.0k
views
samtools mpileup error - 1 samples in 1 input files
samtools
BAM
mpileup
SAM
updated 7 hours ago by
Damla
• 0 • written 2.4 years ago by
joseph.kelly.94
▴ 10
2
votes
4
replies
347
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
6 hours ago by
Pegasus
▴ 100
2
votes
2
replies
115
views
How do i calculate the mean of triplicates in a data.frame based on pattern?
tidyverse
r
mean
summarize
updated 11 hours ago by
dariober
14k • written 12 hours ago by
Assa Yeroslaviz
★ 1.9k
2
votes
6
replies
2.2k
views
Tool:
Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
biomart
annotation
Ensembl
updated 10 hours ago by
Mike Smith
★ 2.0k • written 2.8 years ago by
Shred
★ 1.4k
2
votes
3
replies
313
views
How do we do quantification using stringtie merge option for all the merged samples generated.
stringtie
quantification
15 hours ago by
Varsha
• 0
1
vote
7
replies
397
views
samtools write-index
samtools
22 hours ago by
R.L.
• 0
1
vote
2
replies
150
views
Help me with Heatmap
RNA
R
seq
DESeq2
updated 8 hours ago by
MolGeek
▴ 50 • written 11 hours ago by
vmpsb
• 0
1
vote
2
replies
3.8k
views
How can run cd-hit-est with a clstr threshold less than 0.8?
cd-hit
cluster
updated 16 hours ago by
Asaf
10k • written 6.3 years ago by
m.koohi.m
▴ 120
1
vote
0
replies
79
views
Search within posts based on tags using the Biostars API
api
meta
biostars
16 hours ago by
Bálint
▴ 10
1
vote
2
replies
258
views
Failed to download data from EBI with ascp
EBI
aspera
updated 19 hours ago by
孝中
• 0 • written 6 weeks ago by
biock
▴ 60
0
votes
1
reply
53
views
Help with proteomics downstream analysis
spectrometry
mass
proteomics
updated 40 minutes ago by
Nat.Nataren
▴ 10 • written 9 hours ago by
Álvaro
• 0
0
votes
0
replies
61
views
PyRMD
Virtual
Screening
learning
cheminformatics
machine
18 hours ago by
s
• 0
0
votes
1
reply
171
views
How to decrease the motif score?
scores
Motif
updated 17 hours ago by
ATpoint
82k • written 2 days ago by
Hadia
• 0
0
votes
2
replies
220
views
Tools for chromosomal aneuploidy detection
genetics
aneuploidy
NGS
human
updated 16 hours ago by
a.alnawfal.1992
▴ 260 • written 4 days ago by
adarsh_pp
▴ 40
0
votes
0
replies
75
views
Subset of Transcripts- How do I proceed with it?
Stringite
Quantification
15 hours ago by
Varsha
• 0
0
votes
2
replies
224
views
perl Error - needLargeMem Bigwig
Bigwig
perl
mitosalt
14 hours ago by
marco.barr
▴ 130
0
votes
1
reply
201
views
BAM to Bedgraph creating an empty file
Bisulfite-seq
bismark
updated 13 hours ago by
raphael.B
▴ 520 • written 3 days ago by
irebekah.c
• 0
0
votes
3
replies
251
views
How to add Ensembl ids after Pseudobulk analysis by DESeq2
Seurat
Pseudobulk
single-cell
DESeq2
scRNA
updated 12 hours ago by
ATpoint
82k • written 2 days ago by
Sara
▴ 30
0
votes
1
reply
101
views
Salmon vs Kallisto vs RSEM
quantification
kallisto
Salmon
transcriptomic
RSEM
updated 9 hours ago by
Rob
6.6k • written 11 hours ago by
Mohamed Abderrahmane
▴ 20
0
votes
0
replies
82
views
virus genome annotation
annotation
gff3
consensus
NCBI
coding_regions
8 hours ago by
Ghada
• 0
0
votes
2
replies
88
views
identify the coordinate for coding and non_coding region.
coding
non_coding
8 hours ago by
Ghada
• 0
0
votes
0
replies
25
views
The number of region with the motif sequence is different between HOMER outputs
findMotifsGenome
HOMER
annotatePeaks
3 hours ago by
Aki
▴ 20
0
votes
0
replies
34
views
Error with Pheatmap ()
r
deseq2
3 hours ago by
vmpsb
• 0
0
votes
0
replies
20
views
Calculating F_IS, F_IT on ancient DNA
adna
3 hours ago by
devenvyas
▴ 740
0
votes
0
replies
10
views
How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Package?
CNV
omics
R
multi
1 hour ago by
Ngrin
• 0
30 results • Page
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Recent Votes
Answer: Help me with simple data for RNA seq
A: Most Popular and fancy SNP analysis tools Comparison: Plink, SNPassoc, SNPRelate
Most Popular and fancy SNP analysis tools Comparison: Plink, SNPassoc, SNPRelate
GWAS analysis tool
Answer: Cut&Run and heatmap
Comment: Functional enrichment analysis for unique gene IDs
Answer: How do i calculate the mean of triplicates in a data.frame based on pattern?
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Recent Replies
Answer: Help with proteomics downstream analysis
by
Nat.Nataren
▴ 10
I would be contacting the company as a start, and getting access to your raw data.
Comment: txt file to bigwig
by
ATpoint
82k
Please stop asking questions in existing threads. Delete these two comments and open a new question with all the necessary details to under…
Comment: Venter Genome Vcf
by
Jeremy Leipzig
22k
there are some violations in this VCF: - Invalid count number, with fixed count the number should be 1 or higher: key=INFO name=TSA type=St…
Comment: Cut&Run and heatmap
by
sogand
• 0
Hi all, I am new to cut&run or any peak-related analysis and appreciate any guidance on my issue here: I have analyzed peakcalling .txt …
Comment: Functional enrichment analysis for unique gene IDs
by
Pegasus
▴ 100
Since the locus-tags are unclassified, I used the CDS instead of the locus-tags to retrive their ensembl IDs using ensembl bacteria website…
Comment: samtools mpileup error - 1 samples in 1 input files
by
Damla
• 0
Could you find a solution to your problem?
Comment: txt file to bigwig
by
sogand
• 0
Hi all, I am new to these kind of analysis and appreciate any guidance on my issue here: I have analyzed peakcalling .txt files that are r…
Answer: Help me with Heatmap
by
MolGeek
▴ 50
Hello! So, what is the correct design ? You will have to ask yourself, what do you want to compare? WT vs mut? If so it will be strain. 2…
Answer: Help me with simple data for RNA seq
by
swbarnes2
14k
1) you have to say what question you are actually asking. There are few different designs that would address different questions. 2) work…
Comment: identify the coordinate for coding and non_coding region.
by
Ghada
• 0
mmmm I am not sure. This is how I generate my consnsus sequence # Get consensus fastq file samtools mpileup -uf KT992094.1.fasta…
Comment: identify the coordinate for coding and non_coding region.
by
GenoMax
142k
Why do you have those N's at the beginning of the sequence? If the remainder of the sequence matches 100% then the initial N's may be wrong…
Answer: Salmon vs Kallisto vs RSEM
by
Rob
6.6k
It's nice that you've gone ahead and done some analysis of these results and their differences on your data yourself. These more general qu…
Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
by
Mike Smith
★ 2.0k
In this location there is an "entrez" file which maps ensembl IDs to Entrez. It's probably as definitive as you're going to find: https://…
Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
by
Anya
• 0
Tried it just recently with almost the same results. 456 out of 496 IDs for protein-coding genes returned as "NA" even though I can see NCB…
Answer: Download All The Bacterial Genomes From Ncbi
by
2284046470
• 0
wget https://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/assembly_summary.txt awk -F '\t' '{if($12=="Complete Genome" && $11=…
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