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Answer: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
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first get the main ID in stringdb:
$ wget -qO - "https://string-db.org/api/tsv-no-header/get_string_ids?identifiers=RPS4Y1&species=960…
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Are you sure you've loaded the library properly? Have you checked if edgeR is ticked in the list of installed packages? Double-check it. If…
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Hi, I just wanted to update that IEGscore and PCNAscore were linearly dependent (or linear combinations of each other). I tested this using…
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if I understood correctly, I might need fle `prot.accession2taxid.gz` file? According to the [documentation][1] in column 2 is Accession.ve…
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To follow on Mathew's reply, one way might be to try and see if you can download and install the package tarball locally:
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Hi,
This is what happens when I run some code to diagnose the issue. First, I wanted to see what version of R was required for the package…
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I was given a solution by a colleague -- it seems a little hacky, but worked really well!
> one way to get this to work is to use --clu…
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Hi Matthew, Thank you very much for your inputs. I am working with Neogen genotyping data, which includes GC values less than 0.15.
Comment: Downloading full alignments from Pfam
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I tried contacting Pfam, they replied that indeed there is an issue on their side with the full alignments, which should be repaired in the…
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Don't know about others, but I would never contact someone about potential employment based only on their interests and with zero knowledge…
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These TCGA samples were taken 10 ~ 20 years ago, and there is no way they have been treated by the modern immunotherapy.
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> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1))
It is not recommended. No such code appears anywh…
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