Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
40 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
1
view
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
just now by
Scott McKay
▴ 30
0
votes
0
replies
4
views
Cellphonedb results
cpdb
visulization
cellphonedb
2 minutes ago by
piotto
▴ 20
0
votes
0
replies
8
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
9 minutes ago by
belloy
• 0
0
votes
2
replies
35
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
just now by
Ngrin
• 0
0
votes
1
reply
40
views
Applying the metacell2 algorithm using python
single-cell
scanpy
cells
meta
python
updated 33 minutes ago by
Wayne
★ 2.0k • written 2 hours ago by
JACKY
▴ 140
1
vote
6
replies
539
views
anRichment is missing
WGCNA
anRichment
updated 2 hours ago by
GenoMax
142k • written 5 months ago by
michael.flower.14
▴ 180
1
vote
1
reply
116
views
Gene ontology and homologs
gene-ontology
updated 3 hours ago by
geneontologyhelp
▴ 400 • written 1 day ago by
beshka194
• 0
1
vote
2
replies
134
views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
R
updated 1 hour ago by
zx8754
11k • written 9 hours ago by
snajafy
• 0
0
votes
0
replies
42
views
Cox Model with interaction item interpretation
Cox
5 hours ago by
Bine
▴ 60
0
votes
0
replies
44
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
5 hours ago by
MAPK2
▴ 40
0
votes
0
replies
36
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
5 hours ago by
Javier
• 0
0
votes
4
replies
279
views
Question regarding WGCNA
WGCNA
Network-construction
updated 3 hours ago by
andres.firrincieli
3.6k • written 2 days ago by
deepak
• 0
0
votes
0
replies
44
views
vdjtools
vdjtools
6 hours ago by
yueli7
▴ 250
0
votes
0
replies
62
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
6 hours ago by
Biostar
2.7k
0
votes
1
reply
73
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 3 hours ago by
andres.firrincieli
3.6k • written 7 hours ago by
Antonio
• 0
0
votes
0
replies
57
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 8 hours ago by
Ram
43k • written 8 hours ago by
sidrah.maryam
▴ 50
0
votes
0
replies
46
views
Normalizing AMR gene count data
abundance
RGI
updated 8 hours ago by
Ram
43k • written 8 hours ago by
arshad1292
▴ 100
0
votes
0
replies
65
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 8 hours ago by
Ram
43k • written 10 hours ago by
MICOS
• 0
0
votes
0
replies
52
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 11 hours ago by
Pierre Lindenbaum
161k • written 11 hours ago by
sarumonsus
• 0
0
votes
2
replies
234
views
Tissue-specific DEG analysis with DEseq2
DEseq2
RNA-seq
DEG
R
1 hour ago by
M.
▴ 30
0
votes
0
replies
69
views
How to implement an IGV to streamlit app?
python
streamlit
igv
12 hours ago by
avigail.shnaider
• 0
1
vote
5
replies
242
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 8 hours ago by
Ram
43k • written 14 hours ago by
snajafy
• 0
0
votes
2
replies
163
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
updated 8 hours ago by
GenoMax
142k • written 1 day ago by
mropri
▴ 150
0
votes
1
reply
262
views
DMRcate ranges liftover hg19 to hg38
DMRcate
Liftover
DMR
Methylation
annotation
updated 20 hours ago by
aaron.stevens
• 0 • written 12 weeks ago by
sativus
▴ 20
2
votes
2
replies
183
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB
protein
STRING-DB-API
22 hours ago by
brandon
• 0
1
vote
5
replies
309
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 7 hours ago by
Ram
43k • written 1 day ago by
snajafy
• 0
4
votes
1
reply
193
views
LD-prune variants while maintaining a list of SNPs
snp
vcf
plink
filtering
independent
updated 12 hours ago by
zx8754
11k • written 2 days ago by
Jautis
▴ 560
0
votes
1
reply
114
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 36 minutes ago by
bk11
★ 2.4k • written 1 day ago by
Yoosef
▴ 60
3
votes
4
replies
362
views
Design matrix Differential expression analysis
RNA-seq
Differential-expression
6 hours ago by
SHN
▴ 40
0
votes
1
reply
230
views
creating batch colum for batch correction
batch-correction
combat
10 hours ago by
Expert
▴ 10
0
votes
1
reply
180
views
Help with DGEList function
DGEList
R
updated 23 hours ago by
marco.barr
▴ 90 • written 2 days ago by
Natali
• 0
0
votes
2
replies
213
views
Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read reverse strand" (flag 32/0x20)
PE
BAM
SAM
flag
paired-end
5 hours ago by
kalavattam
▴ 190
1
vote
0
replies
142
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
updated 12 hours ago by
zx8754
11k • written 3 days ago by
Emilie
▴ 10
10
votes
10
replies
612
views
High Malat-1 expression in single cell data
single-cell
updated 9 hours ago by
t.montserrat.ayuso
▴ 10 • written 7 days ago by
carolofharvest
▴ 30
0
votes
5
replies
263
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 5 minutes ago by
Chris Dean
▴ 390 • written 4 days ago by
sovrappensiero
▴ 90
2
votes
8
replies
440
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
1 hour ago by
Qroid
▴ 40
1
vote
3
replies
279
views
ERROR When Using Ensembl Plants Biomart Wget API
biomart
plant
ensembl
16 hours ago by
Dora
▴ 10
2
votes
2
replies
178
views
Gene Specific coverage from WGS data
linux
WGS
Bioinformatics
SARS
CoV2
updated 8 hours ago by
GenoMax
142k • written 6 days ago by
Adyasha
• 0
1
vote
10
replies
838
views
error to run rnammer
phylogenomics
rRNA_extraction
rnammer
updated 14 hours ago by
antonio.spl
• 0 • written 3 months ago by
microorganism_001
▴ 30
1
vote
11
replies
5.5k
views
Truncated Bam Error
R
next-gen
sequencing
software error
updated 17 hours ago by
guanghao
• 0 • written 6.1 years ago by
vivekruhela
▴ 20
40 results • Page
1 of 1
Recent Votes
How to save GRanges object to csv file
Answer: How to get proteins from GFF file resulted from MAKER annotation
Answer: Gene ontology and homologs
Comment: anRichment is missing
Comment: Gene Specific coverage from WGS data
Comment: Gene Specific coverage from WGS data
Comment: High Malat-1 expression in single cell data
Recent Locations •
All
United States,
1 minute ago
Canada,
2 minutes ago
Russia,
3 minutes ago
United States,
3 minutes ago
Belgium,
3 minutes ago
outer space,
5 minutes ago
Canada,
6 minutes ago
Recent Awards •
All
Popular Question
to
Scott McKay
▴ 30
Popular Question
to
A. Domingues
★ 2.7k
Scholar
to
LChart
3.9k
Popular Question
to
JACKY
▴ 140
Popular Question
to
bhumm
▴ 140
Teacher
to
Matthias Zepper
4.6k
Popular Question
to
sidrah.maryam
▴ 50
Recent Replies
Comment: Problem with Seurat package in PercentageFeatureSet function
by
bk11
★ 2.4k
Did you check where the `features.tsv.gz` file had Gene IDs or Ensembl IDs?
Answer: How to compute TPM normalized values for TCGA miRNA data?
by
dsull
★ 6.0k
TPM is irrelevant for miRNA-seq; CPM works fine. TPM tries to adjust for length effects by dividing by gene length (e.g. reducing the im…
Comment: Applying the metacell2 algorithm using python
by
Wayne
★ 2.0k
"I'm also unsure what qualifies as a lateral gene." The [README where you reference](https://metacells.readthedocs.io/en/latest/readme.htm…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
sovrappensiero
▴ 90
Ah, yes this makes sense! I knew this was an issue with, say, using kraken2 on shotgun metagenomic reads, but I don't have a lot of experi…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴ 40
Thank you. Maybe it's best to confirm with the authors about how they're getting responder/non-responder labels. I'll do that now.
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴ 390
If you sequenced a short hypervariable region, most of your sequence reads will not be able to be assigned to the species level. One possi…
Comment: anRichment is missing
by
GenoMax
142k
Consider emailing Dr. Horvath about this. Until enough people make him aware of this issue WGCNA "problem" is unlikely to get fixed.
Comment: anRichment is missing
by
Tatyana
• 0
Unfortunately, there are only tutorials and codes for tutorials for WGCNA, not installation files for any their packages... :(
Comment: anRichment is missing
by
GenoMax
142k
See this link for the WGCNA documentation and code from Peter Langfelder : https://bioinformatics.stackexchange.com/questions/21885/where-t…
Comment: anRichment is missing
by
Tatyana
• 0
The problem is back, Horwath's lab web is down again. Is it possible to get anRichment istallation file somewhere? (The greater problem is …
Comment: 16S rRNA microbiome differential abundance analysis with DESeq2 finds same micro
by
andres.firrincieli
3.6k
1. Maribaculaceae is a family not a genus 2. Who said that ASV with the same taxonomic classification must have the same behaviour? 3. With…
Comment: Question regarding WGCNA
by
andres.firrincieli
3.6k
the within-group variability is so small that these look like technical replicates rather than independent biological replicates
Answer: Gene ontology and homologs
by
geneontologyhelp
▴ 400
No. Homology is defined as shared common ancestry. Two genes that take part in the same biological process may not have the same functio…
Answer: error in R code
by
Matthias Zepper
4.6k
I quickly googled [the source code of that function][1], and the error is triggered by this condition: if(length(wn) < 1 || !is.whol…
Comment: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
by
kalavattam
▴ 190
Thanks for the explanation. I noticed and corrected a typo in which "*read* reverse strand" initially read as "*mate* reverse strand" in t…
Traffic: 2616 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6