updated 9 hours ago by
Gordon Smyth
★
7.2k
•
written 1 day ago by
marineandriot
•
0
2
votes
1
reply
138
views
1
vote
8
replies
438
views
updated 18 hours ago by
Alex Reynolds
35k
•
written 4 days ago by
ntsopoul
▴
60
1
vote
16
replies
713
views
updated 7 hours ago by
GenoMax
142k
•
written 3 days ago by
hophuquy0944
•
0
1
vote
1
reply
128
views
1
vote
4
replies
305
views
0
votes
5
replies
286
views
0
votes
0
replies
57
views
8 hours ago by
Moinuddin
•
0
0
votes
0
replies
38
views
updated 5 hours ago by
Pierre Lindenbaum
161k
•
written 5 hours ago by
Mohamed Samir
▴
20
0
votes
0
replies
66
views
0
votes
2
replies
261
views
updated 21 minutes ago by
anton.i.petrov
•
0
•
written 3 months ago by
Larissa
•
0
0
votes
7
replies
4.3k
views
updated 18 hours ago by
aidangcruickshank
▴
10
•
written 3.7 years ago by
rthapa
▴
90
0
votes
4
replies
270
views
13 hours ago by
mavy
▴
10
0
votes
4
replies
278
views
updated 13 hours ago by
txema.heredia
▴
130
•
written 1 day ago by
Ngrin
•
0
Recent Votes
Recent Locations •
All
United States, 8 minutes ago
Netherlands, 13 minutes ago
Colombia, 17 minutes ago
United States, 24 minutes ago
United States, 26 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 26 minutes ago
United Kingdom, 27 minutes ago
Recent Awards •
All
Popular Question to
synat.keam
▴
100
Popular Question to
syedahamdani94
•
0
Popular Question to
mohammadhassanj
▴
260
Popular Question to
finswimmer
16k
Popular Question to
Ezequiel
•
0
Recent Replies
Comment: Traveler with Infernal mapping failed
by
anton.i.petrov
•
0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
Comment: constructing pangenome through psvcp
by
analyst
▴
50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★
1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★
7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.
Table 1 o…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴
130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴
10
Thank you so much for your response . Really appreciate it.
I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
•
0
i have the same error, i used high performance computer, here is my code to set memory.
srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴
10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
•
0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Traffic: 1093 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6