Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
18 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
32
views
What does it mean single base resolution in sequencing?
SNP
sequencing
updated 8 minutes ago by
LauferVA
4.2k • written 41 minutes ago by
jinyu
▴ 10
2
votes
5
replies
331
views
Fetch table from clinvar database according to a list of rsid
python
clinvar
perl
43 minutes ago by
ashaneev07
▴ 20
0
votes
1
reply
70
views
Downloading full alignments from Pfam
pfam
updated 3 hours ago by
GenoMax
141k • written 7 hours ago by
bef1
• 0
0
votes
1
reply
680
views
Can I run cellassign on samples independently if there is batch effect present?
RNA-Seq
R
cellassign
batch-effect
updated 7 hours ago by
Francesco
▴ 10 • written 3.3 years ago by
gt
▴ 30
1
vote
1
reply
170
views
ChIP-seq datasets: input samples omitted?
ChIP-seq
Normalization
NGS
updated 11 hours ago by
ATpoint
82k • written 2 days ago by
vanbelj
▴ 40
2
votes
6
replies
1.1k
views
Differential Expression using Isoseq-supplemented reference transcriptome
RNA-Seq
Salmon
Isoseq
updated 10 hours ago by
Ram
43k • written 8 months ago by
Calum
▴ 10
0
votes
0
replies
51
views
adjusting for confounders in LMER in R
confounders
LMER
R
11 hours ago by
rene.j.erhardt
▴ 20
0
votes
9
replies
267
views
How many reads for WGS Sequencing?
WGS
Bacterial-Genomics
updated 3 hours ago by
GenoMax
141k • written 16 hours ago by
Ruqaiya
• 0
1
vote
3
replies
173
views
How to assign cell types after integration in scRNA
scRNA-seq
updated 1 hour ago by
ATpoint
82k • written 21 hours ago by
Francesco
▴ 10
0
votes
0
replies
81
views
STAR total splices (in Log.final) vs collapsed splice junctions (in SJ.out.tab)
STAR
21 hours ago by
tnminh89
▴ 10
8
votes
9
replies
656
views
NGS forensics: how to know if data is fabricated
fastq
STAR
NGS
Illumina
updated 20 minutes ago by
Jeremy Leipzig
22k • written 23 hours ago by
noodle
▴ 530
0
votes
0
replies
86
views
Extract protein sequence
fasta
alighment
blast
22 hours ago by
anna
▴ 20
0
votes
0
replies
83
views
Filter low express genes in microarray data
microarray
23 hours ago by
Chris
▴ 260
1
vote
3
replies
297
views
Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:1.1.1.4, 1.1.1.-, 1.1.1.303)?
ontology
metagenomics
database
enzymes
genomics
updated 18 hours ago by
Mensur Dlakic
★ 27k • written 1 day ago by
O.rka
▴ 710
1
vote
7
replies
388
views
gvcf joint calling
WES
GATK
VCF
gVCF
10 hours ago by
zihanss
• 0
1
vote
2
replies
283
views
ScRNAseq-How to correctly choose cell type marker genes
cellAssign
cell-markers
21 hours ago by
Francesco
▴ 10
1
vote
3
replies
287
views
PCA plot
DESeq2
PCAplot
updated 10 minutes ago by
LauferVA
4.2k • written 3 days ago by
Aaliya
▴ 10
2
votes
3
replies
2.5k
views
When to use .vcf or .gvcf files from GATK HaplotypeCaller?
indel
gatk
calling
snp
variant
updated 17 hours ago by
zihanss
• 0 • written 23 months ago by
Vitor1
▴ 120
18 results • Page
1 of 1
Recent Votes
Batch effects : ComBat or removebatcheffects (limma package) ?
How to input margin to UpsetR figure
Comment: How to assign cell types after integration in scRNA
NGS forensics: how to know if data is fabricated
Answer: ChIP-seq datasets: input samples omitted?
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
A: Deeptools plotHeatmap - Maintain Order of Input BED file
Recent Locations •
All
Galway, Ireland,
just now
Barcelona,
just now
UCLA,
4 minutes ago
United States,
6 minutes ago
Canada,
7 minutes ago
Russia,
7 minutes ago
United States,
13 minutes ago
Recent Awards •
All
Popular Question
to
rj.rezwan
• 0
Popular Question
to
husensofteng
▴ 410
Popular Question
to
Raheleh
▴ 260
Popular Question
to
Aspire
▴ 300
Popular Question
to
rene.j.erhardt
▴ 20
Popular Question
to
yueli7
▴ 250
Teacher
to
Wayne
★ 2.0k
Recent Replies
Answer: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
Nowadays since people are used to conceptualizing technologies that sequence every base the term is counterintuitive, but not all technolog…
Comment: PCA plot
by
LauferVA
4.2k
Without more context, we cannot interpret this PCA plot. There are many possibilities. In addition, this question is basic enough that it w…
Comment: NGS forensics: how to know if data is fabricated
by
Jeremy Leipzig
22k
i have the name ready: out**liar**
Comment: What does it mean single base resolution in sequencing?
by
GenoMax
141k
Sequencing by hybridization (https://en.wikipedia.org/wiki/Sequencing_by_hybridization ) is likely not giving you single base resolution. B…
Comment: Fetch table from clinvar database according to a list of rsid
by
ashaneev07
▴ 20
Hii... i have updated the script in python..But, still getting no data found. Actually the data is there, i have print the parsed html file…
Comment: How to assign cell types after integration in scRNA
by
ATpoint
82k
https://bioconductor.org/books/release/OSCA.multisample/using-corrected-values.html
Comment: Downloading full alignments from Pfam
by
GenoMax
141k
Not as convenient but the entire set of full alignments can be downloaded here: https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pf…
Comment: How many reads for WGS Sequencing?
by
GenoMax
141k
> What does clipped Fastq mean? Probably means that NCBI has already scanned and trimmed adapter sequencers. > both forward and revers…
Comment: How many reads for WGS Sequencing?
by
GenoMax
141k
You can use the default `adapters.fa` file included in the `resources` folder of [**BBMap suite**][1] (program to use is `bbduk.sh`) or a p…
Comment: How many reads for WGS Sequencing?
by
GenoMax
141k
Only way to find out is to try. It may work but if it is not going to then you will find that out quick (process would likely crash because…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
Also, there is no mention of adapter sequence so which adapter sequence should i use to remove it from some other reads?
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
Also, Do you think i can reproduce at least most part of the data from the paper just on my laptop? It has 4 logical processors (Intel(R) C…
Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.3k
While I think this is an interesting case, I've before found cleaned 'raw' data on SRA. It happens: bioinformaticians receive the raw data,…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
1. What does clipped Fastq mean? both forward and reverse reads in the same file? 2. Why would you remove 2000bp contigs? I feel it will gi…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
Well, I downloaded both the reads from-[LINK][1]. Thats all i did. Thats the only thing i need to do, right? I'l try spades. [1]: http…
Traffic: 1845 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6