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983 results • Page
1 of 20
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0
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14
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student
epitranscriptomics
updated just now by
ATpoint
82k • written 25 minutes ago by
useriwa
• 0
0
votes
0
replies
16
views
Imputation of missing genotypes
panel
beagle
imputation
36 minutes ago by
analyst
▴ 30
0
votes
0
replies
16
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
54 minutes ago by
Assa Yeroslaviz
★ 1.8k
3
votes
1
reply
25
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 45 minutes ago by
dariober
14k • written 1 hour ago by
nhaus
▴ 330
0
votes
1
reply
23
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
updated 51 minutes ago by
Papyrus
★ 2.9k • written 1 hour ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
152
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 1 hour ago by
Weiwen
• 0 • written 1 day ago by
MICOS
▴ 10
0
votes
0
replies
18
views
Correlation Analysis
statistics
methylation
NGS
expression
1 hour ago by
Researcher
▴ 30
0
votes
0
replies
20
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
1 hour ago by
robert.flynn.21
• 0
1
vote
1
reply
116
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 1 hour ago by
Michael
54k • written 14 hours ago by
Guillermo
• 0
0
votes
0
replies
21
views
Gene density plot
density
gene
2 hours ago by
gubrins
▴ 290
0
votes
3
replies
147
views
Understanding STAR output (Aligned.out.sam file)
STAR
paired-end
read
updated 3 hours ago by
i.sudbery
19k • written 11 hours ago by
heelpPlease
• 0
0
votes
3
replies
67
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 1 hour ago by
Michael
54k • written 3 hours ago by
qwertyuiop26
• 0
0
votes
1
reply
102
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 4 hours ago by
ATpoint
82k • written 20 hours ago by
MAPK2
▴ 40
0
votes
1
reply
98
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 7 hours ago by
Xiaofen
• 0 • written 9 hours ago by
toddknutson
▴ 60
0
votes
1
reply
81
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
updated 11 hours ago by
LChart
3.9k • written 12 hours ago by
David
• 0
1
vote
2
replies
114
views
Where to get the following bed file?
WES
bed
reference
file
updated 14 hours ago by
GenoMax
142k • written 14 hours ago by
wyuan37
• 0
0
votes
0
replies
61
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
15 hours ago by
Scott McKay
▴ 30
0
votes
0
replies
61
views
Cellphonedb results
cpdb
visulization
cellphonedb
15 hours ago by
piotto
▴ 20
0
votes
0
replies
77
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
15 hours ago by
belloy
• 0
0
votes
3
replies
165
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 4 hours ago by
swbarnes2
14k • written 16 hours ago by
Ngrin
• 0
0
votes
1
reply
122
views
Applying the metacell2 algorithm using python
single-cell
scanpy
cells
meta
python
updated 15 hours ago by
Wayne
★ 2.0k • written 17 hours ago by
JACKY
▴ 140
1
vote
6
replies
632
views
anRichment is missing
WGCNA
anRichment
updated 17 hours ago by
GenoMax
142k • written 5 months ago by
michael.flower.14
▴ 180
1
vote
1
reply
161
views
Gene ontology and homologs
gene-ontology
updated 18 hours ago by
geneontologyhelp
▴ 400 • written 1 day ago by
beshka194
• 0
1
vote
2
replies
171
views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
R
updated 16 hours ago by
zx8754
11k • written 1 day ago by
snajafy
• 0
0
votes
0
replies
72
views
Cox Model with interaction item interpretation
Cox
20 hours ago by
Bine
▴ 60
0
votes
0
replies
63
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
20 hours ago by
Javier
• 0
0
votes
4
replies
321
views
Question regarding WGCNA
WGCNA
Network-construction
updated 18 hours ago by
andres.firrincieli
3.6k • written 3 days ago by
deepak
• 0
0
votes
0
replies
71
views
vdjtools
vdjtools
21 hours ago by
yueli7
▴ 250
0
votes
0
replies
95
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
22 hours ago by
Biostar
2.7k
0
votes
1
reply
117
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 40 minutes ago by
andres.firrincieli
3.6k • written 23 hours ago by
Antonio
• 0
0
votes
0
replies
83
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 23 hours ago by
Ram
43k • written 23 hours ago by
sidrah.maryam
▴ 50
0
votes
0
replies
71
views
Normalizing AMR gene count data
abundance
RGI
updated 23 hours ago by
Ram
43k • written 23 hours ago by
arshad1292
▴ 100
0
votes
0
replies
82
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 1 day ago by
Pierre Lindenbaum
161k • written 1 day ago by
sarumonsus
• 0
0
votes
2
replies
257
views
Tissue-specific DEG analysis with DEseq2
DEseq2
RNA-seq
DEG
R
16 hours ago by
M.
▴ 30
0
votes
0
replies
90
views
How to implement an IGV to streamlit app?
python
streamlit
igv
1 day ago by
avigail.shnaider
• 0
1
vote
5
replies
264
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 23 hours ago by
Ram
43k • written 1 day ago by
snajafy
• 0
0
votes
2
replies
187
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
updated 23 hours ago by
GenoMax
142k • written 1 day ago by
mropri
▴ 150
0
votes
1
reply
282
views
DMRcate ranges liftover hg19 to hg38
DMRcate
Liftover
DMR
Methylation
annotation
updated 1 day ago by
aaron.stevens
• 0 • written 12 weeks ago by
sativus
▴ 20
2
votes
2
replies
209
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB
protein
STRING-DB-API
1 day ago by
brandon
• 0
0
votes
0
replies
105
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
1 day ago by
KHURRAM SHAHZAD
• 0
1
vote
5
replies
338
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 22 hours ago by
Ram
43k • written 1 day ago by
snajafy
• 0
0
votes
0
replies
102
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
1 day ago by
Christopher
• 0
4
votes
1
reply
215
views
LD-prune variants while maintaining a list of SNPs
snp
vcf
plink
filtering
independent
updated 1 day ago by
zx8754
11k • written 2 days ago by
Jautis
▴ 560
2
votes
2
replies
300
views
Association study using SNP data
Association
Allele
Parentage
SNP
1 day ago by
drajangirija
• 0
0
votes
0
replies
97
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
1 day ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
109
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
1 day ago by
DGTool
• 0
0
votes
0
replies
118
views
Seurat V5 integration
Seurat
samples
integration
combine
2 days ago by
starswillfade
▴ 10
0
votes
1
reply
170
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 15 hours ago by
bk11
★ 2.4k • written 2 days ago by
Yoosef
▴ 60
0
votes
1
reply
436
views
Job:
Seeking Bioinformatics/Drug Design Opportunities - PhD in Pharmacology with Experience in RNA-seq, CADD & Deep Learning Molecular Generation
search
job
updated 1 day ago by
GenoMax
142k • written 2 days ago by
tulip
• 0
3
votes
4
replies
396
views
Design matrix Differential expression analysis
RNA-seq
Differential-expression
updated 13 hours ago by
Gordon Smyth
★ 7.1k • written 3 days ago by
SHN
▴ 40
983 results • Page
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Recent Votes
Answer: plotting PCA PLINK eigenvec output in R
A: PCA in a RNA seq analysis
A: PCA in a RNA seq analysis
Answer: Figures are disappeared from html report of SnpEff
Answer: Figures are disappeared from html report of SnpEff
Comment: removeBatchEffect explained using base R linear models
removeBatchEffect explained using base R linear models
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Recent Replies
Comment: student
by
ATpoint
82k
Please --- https://www.biostars.org/p/357878/ https://www.biostars.org/p/75548/ [Ten Simple Rules for Getting Help from Online Scientifi…
Comment: High Malat-1 expression in single cell data
by
carolofharvest
▴ 30
If rRNA genes have been mistakenly assigned to these genes, could it be expected that the percentage of ribosomal genes(rpl,rps) would be …
Comment: removeBatchEffect explained using base R linear models
by
dariober
14k
(+1) *"implementing" the method just using base R linear models.*: I find implementing from basic starting point to be one of the best, if …
Comment: Is therer any suggestions on mapping rate of WGBS data?
by
Papyrus
★ 2.9k
Mapping rate for bisulfite data is typically worse because of reduced complexity of the sequences. The efficiency will depend on your read …
Comment: High Malat-1 expression in single cell data
by
carolofharvest
▴ 30
In your paper, you mentioned that a normalization value of 0 for Malat1 is also indicative of a low-quality cell. But what if the dropout e…
Comment: Highest variable features in single cell data
by
carolofharvest
▴ 30
Thank you. But can we say that this is biologically informative ? If this gene had been detected in excess specifically within a single c…
Answer: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
by
Weiwen
• 0
$20,000 for the first Prize?XD
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
Michael
54k
Why does your question sound like an assignment (if it's not, reformulate it, note you are in no position to give the volunteers here assig…
Answer: Converting Nebula Genomics Data to 23andMe Format
by
Michael
54k
Hi, Thank you for your contribution, here is your *free* code review: - This scenario is sort of ideal for a snakemake workflow and I th…
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
qwertyuiop26
• 0
I'm sorry for any confusion or inconvenience. I'm seeking guidance on which search algorithms are used in the FM-index. I've done extensive…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
• 0
Hi Daria, I have downloaded pling and the other dependencies as recommended on your github page. I have tried to run the tool a few times …
Answer: Understanding STAR output (Aligned.out.sam file)
by
i.sudbery
19k
The insert size is measured from outermost edge of this read, to the outer most edge of its mate. Like, literally, start_second - start_fir…
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
Michael
54k
So this is your exam question or assignment? Please understand that posting this here is not doing anyone any good. You are supposed to lea…
Answer: What is the proper way to identify the cell types of scRNAseq cluster?
by
ATpoint
82k
I will say that the proper way is the one that confidently identifies your celltypes. > optimal number of marker genes to consider. T…
Comment: How to compute TPM normalized values for TCGA miRNA data?
by
swbarnes2
14k
When everything is the same size, correcting for size is pointless. It doesn't change the numbers much at all.
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