updated 1 day ago by
Ram
44k
•
written 1 day ago by
emmanouil.a
▴
120
0
votes
0
replies
90
views
11
votes
13
replies
6.7k
views
7 follow
0
votes
1
reply
264
views
updated 1 day ago by
韩雨
•
0
•
written 5 weeks ago by
solomoncharles77
▴
90
5
votes
4
replies
5.2k
views
6 follow
1
vote
1
reply
126
views
0
votes
0
replies
60
views
7
votes
3
replies
13k
views
updated 2 days ago by
Akash D
▴
60
•
written 6.5 years ago by
rob.costa1234
▴
310
0
votes
1
reply
142
views
updated 1 day ago by
Ram
44k
•
written 2 days ago by
mohamadzare6022
▴
10
7
votes
13
replies
822
views
7 follow
0
votes
0
replies
95
views
0
votes
0
replies
90
views
0
votes
0
replies
90
views
2 days ago by
Jacob
•
0
3
votes
8
replies
874
views
updated 2 days ago by
a.penatauber
•
0
•
written 3 months ago by
Lucas R.F.
▴
20
0
votes
0
replies
95
views
0
votes
4
replies
215
views
2 days ago by
reza
▴
300
0
votes
1
reply
129
views
updated 1 day ago by
Ram
44k
•
written 2 days ago by
avelarbio46
▴
30
0
votes
1
reply
140
views
1
vote
2
replies
231
views
1
vote
3
replies
229
views
0
votes
0
replies
101
views
5
votes
3
replies
201
views
updated 2 days ago by
GenoMax
142k
•
written 2 days ago by
Christopher
▴
10
0
votes
0
replies
113
views
2 days ago by
Tim
•
0
2
votes
6
replies
305
views
2 days ago by
anikcropscience
▴
230
0
votes
0
replies
101
views
updated 2 days ago by
Ram
44k
•
written 2 days ago by
letizia.ottaviani
•
0
0
votes
6
replies
273
views
updated 2 days ago by
ATpoint
82k
•
written 2 days ago by
machaalani29
•
0
0
votes
0
replies
101
views
updated 2 days ago by
Ram
44k
•
written 2 days ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
127
views
3
votes
1
reply
158
views
updated 2 days ago by
Jouni Sirén
▴
380
•
written 3 days ago by
StevieP
▴
10
0
votes
0
replies
109
views
0
votes
3
replies
296
views
updated 2 days ago by
colindaven
6.4k
•
written 4 days ago by
Bjorn
•
0
0
votes
1
reply
150
views
updated 2 days ago by
Ram
44k
•
written 3 days ago by
He11oJe11o
•
0
0
votes
0
replies
89
views
0
votes
3
replies
210
views
0
votes
1
reply
151
views
0
votes
0
replies
102
views
3 days ago by
dlera.lozano
▴
10
0
votes
0
replies
115
views
3
votes
6
replies
340
views
updated 2 days ago by
Ram
44k
•
written 3 days ago by
anasjamshed
▴
120
0
votes
1
reply
182
views
updated 3 days ago by
andersdetermig
▴
20
•
written 4 days ago by
Christopher
•
0
0
votes
2
replies
372
views
1
vote
10
replies
633
views
0
votes
4
replies
236
views
2
votes
4
replies
263
views
2 days ago by
Arton
▴
10
1
vote
3
replies
199
views
0
votes
3
replies
189
views
3
votes
2
replies
181
views
2 days ago by
Tuấn Anh
•
0
2
votes
4
replies
1.2k
views
1
vote
3
replies
303
views
0
votes
2
replies
204
views
1
vote
3
replies
205
views
updated 3 days ago by
Pierre Lindenbaum
162k
•
written 3 days ago by
mrk
•
0
0
votes
3
replies
246
views
Recent Votes
Recent Locations •
All
India, 1 minute ago
UCLA, 7 minutes ago
Sweden, 13 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 16 minutes ago
Santiago de Compostela, Spain, 21 minutes ago
Morocco, 22 minutes ago
Taiwan, 23 minutes ago
Recent Awards •
All
Popular Question to
seta
★
1.9k
Popular Question to
melissachua90
▴
70
Popular Question to
Hamtaro
▴
50
Popular Question to
ericrkofman
▴
20
Scholar to
chrchang523
10k
Popular Question to
garcesj
▴
50
Recent Replies
Comment: Number of non-ATCG nucleotides replaced by Salmon
by
Tonya S.
•
0
Oops, yes, that must be where they are coming from. For some reason, I was thinking the genome was just soft-masked. How embarrassing! Than…
Comment: Number of non-ATCG nucleotides replaced by Salmon
by
Rob
6.6k
If there are no other signs that anything is awry, I probably wouldn't worry about this. Is it possible that these non-canonical nucleotid…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
Brian Bushnell
20k
I examined nine 10B runs and five 25B runs (we just started getting 25B flowcells a few months ago). I did not pay close attention but it …
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
GenoMax
142k
> I don't know how widespread these issues are outside of JGI.
Very few small/medium sequencing centers likely have NovaSeq X. This is the…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
Brian Bushnell
20k
Supporting figures, taken from some slides I prepared for internal use.
HDist 0, 1, and 2 correspond to 0, 1, and 2 mismatches allowed in …
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
•
0
This works. Thank you so so much!
Comment: Harmony integration group.by.var parameter
by
jared.andrews07
★
17k
>I am not sure, but using "Sample_ID" might remove the differences between the conditions right ?
More than likely, it'd at least impact t…
Comment: Harmony integration group.by.var parameter
by
Picasa
▴
640
Thanks jared.andrews07 for your answer.
So, you are suggesting to use only "Donor" in the integration?
```r
RunHarmony(seu_obj, group.by.…
Comment: Single cell analysis: Unable to subset cells in seurat object using desired nFea
by
sc_analysis
•
0
I am not sure what should be the cut off. Looking at the vlnplot before subsetting i thought most of the cells are falling under 7500 nfeat…
Comment: How to calculate cell type frequency between two groups in single cell data
by
Sara
▴
30
Thank you for your comment and sorry if this question might be so basic.
How can I normalize the number of cells?
If I am not wrong the i…
Comment: Bowtie 1.3.1 alignment error as array 21720,23124 produces sam bam files
by
Deepthi
•
0
I unzipped the fastq files to check whether reads are trimmed adapter or not. I have checked the quality control using fastqc they are go…
Comment: Mutation counts corrected by number of samples
by
Ram
44k
> I want to compare the number of mutations
This comparison will give you literally no useful information.
Answer: How to scrape BioMart data from https://sorfs.ugent.be/ website
by
Pierre Lindenbaum
162k
something like:
seq 1 100 4377380 | while read F ; do wget --no-check-certificate -O - "https://sorfs.ugent.be/database/micrope…
Answer: Harmony integration group.by.var parameter
by
jared.andrews07
★
17k
The variability explained by the variables provided to `group.by.vars` is what Harmony will try to remove. Assuming you want to remove the …
Answer: Why some SNP's allele frequencies in gnomAD are so different between v2 and v4?
by
Jeremy Leipzig
22k
That SNP is in an HLA gene which has had a lot of attention and improvement over the years, ranging from kits to software to the reference …
Traffic: 1315 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6