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Comment: Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
3 days ago by Zhenyu Zhang ★ 1.2k
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174
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Answer: Answer: Human Methylation Infinum Bead - probe to gene mapping
5 days ago by Zhenyu Zhang ★ 1.2k
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495
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Answer: Answer: Artificial deletion in bam
10 days ago by Zhenyu Zhang ★ 1.2k
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333
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Answer: Answer: Help with finding Genomic coordinates and exon they belong to
10 days ago by Zhenyu Zhang ★ 1.2k
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216
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Answer: Answer: Quantify the junction abundance?
11 days ago by Zhenyu Zhang ★ 1.2k
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1
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351
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Answer: Answer: lncRNA from TCGA
11 days ago by Zhenyu Zhang ★ 1.2k
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260
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Answer: Answer: Can I have multiple active GDC download tokens?
18 days ago by Zhenyu Zhang ★ 1.2k
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1
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252
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Answer: Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
28 days ago by Zhenyu Zhang ★ 1.2k
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0
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288
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Answer: Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
4 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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153
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Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 1.2k
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2
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1.4k
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Answer: Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
6 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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289
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Answer: Answer: TCGA metadata intersection
7 weeks ago by Zhenyu Zhang ★ 1.2k
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211
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Comment: Comment: How to map CPTAC digital pathology slides to sample ID and metadata
7 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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308
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Answer: Answer: How to find clinical data for TARGET AML
7 weeks ago by Zhenyu Zhang ★ 1.2k
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437
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Comment: Comment: How to identify biallelic mutations called using WES data?
7 weeks ago by Zhenyu Zhang ★ 1.2k
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662
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Comment: Comment: TCGA Biospecimens Slides Extraction
7 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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662
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Comment: Comment: TCGA Biospecimens Slides Extraction
7 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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662
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Comment: Comment: TCGA Biospecimens Slides Extraction
8 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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357
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
9 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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498
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Answer: Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
11 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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452
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Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
11 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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866
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Comment: Comment: Is it possible to access the code of a bioinformatics article?
11 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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866
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Answer: Answer: Is it possible to access the code of a bioinformatics article?
11 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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676
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Comment: Comment: Manhattan Plot
11 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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443
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Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
12 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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718
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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718
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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688
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Comment: Comment: Understanding gene level copy number data from TCGAbiolinks
4 months ago by Zhenyu Zhang ★ 1.2k
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1
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472
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Answer: Answer: Help doing differential expression analysis -experimental design and gProfiler T
4 months ago by Zhenyu Zhang ★ 1.2k
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0
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411
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Answer: Answer: Diferences between TCGAbiolinks and cBioportal
4 months ago by Zhenyu Zhang ★ 1.2k
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0
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544
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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458
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
5 months ago by Zhenyu Zhang ★ 1.2k
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1
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458
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
5 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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607
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Comment: Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
5 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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544
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
5 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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872
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Comment: Comment: Help locating TCGA data from cbioportal
5 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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607
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Answer: Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
5 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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837
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Comment: Comment: different sample size between TCGA portal and TCGAbiolinks package
5 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.1k
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Comment: Comment: CPTAC data download, transcriptomics
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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601
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Answer: Answer: cptac data download
5 months ago by Zhenyu Zhang ★ 1.2k
2
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0
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1.5k
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Comment: Comment: Can BWA (mem) detect longer deletions?
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.0k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.0k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
6 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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837
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Answer: Answer: different sample size between TCGA portal and TCGAbiolinks package
6 months ago by Zhenyu Zhang ★ 1.2k
0
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2
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1.0k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
6 months ago by Zhenyu Zhang ★ 1.2k
2
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1
reply
5.6k
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Answer: Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
6 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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532
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Answer: Answer: Problems encountered during the survival analysis with TCGA data
6 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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616
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Comment: Comment: TPM RNA-seq data for differential expression analysis
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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447
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Comment: Comment: Comparing multiple RNASeq studies
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.1k
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Comment: Comment: Calculation of TMB on gene level
6 months ago by Zhenyu Zhang ★ 1.2k
243 results • Page 1 of 5
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