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27
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Tutorial:
how to combine multiple RNAseq count files into a single dataframe in R and unix
Unix
RNAseq
R
3 hours ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: Transcription Start Site
5 weeks ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
378
views
Comment:
Comment: scRNAseq normalization
5 weeks ago by
Ming Tommy Tang
★ 3.9k
1
vote
1
reply
513
views
Answer:
Answer: Subsetting Seurat object based on list of cell barcodes
5 weeks ago by
Ming Tommy Tang
★ 3.9k
6
votes
0
replies
527
views
Tutorial:
12 useful command line tools and tricks for genomics data science
unix
updated 11 weeks ago by
zx8754
11k • written 12 weeks ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
292
views
Comment:
Comment: Deleting cells from seurat object
12 weeks ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
307
views
Tutorial:
How to convert sra files to fastq files using parallelized fastq-dump
fastq
sra
3 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
228
views
Tutorial:
How to Label the Y Axis with percentage sign and Order Bars in ggplot2 using a single cell dataset
seurat
single-cell
ggplot2
3 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
271
views
Tutorial:
How to Use Biomart to Find Mouse Orthologs for Human Genes
ids
gene
bioconductor
3 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
768
views
Comment:
Comment: How to get enhancer regions
3 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
768
views
Comment:
Comment: How to get enhancer regions
3 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
693
views
Comment:
Comment: How to covert my gene IDs to gene Symbols
3 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
1.0k
views
Comment:
Comment: Mapping FASTQ files of scRNA-seq to reference genome
3 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
754
views
Comment:
Comment: How to get started in bioinformatics
3 months ago by
Ming Tommy Tang
★ 3.9k
2
votes
2
replies
768
views
Answer:
Answer: How to get enhancer regions
3 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
400
views
Comment:
Comment: annotation before integration
3 months ago by
Ming Tommy Tang
★ 3.9k
3
votes
2
replies
856
views
Answer:
Answer: How to rename multiple fasq files
4 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
334
views
Tutorial:
4 CITE-seq tutorials
CTIE-seq
4 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
1
reply
1.1k
views
Comment:
Comment: multi-omics data integration: a case study with transcriptomics and genomics mut
4 months ago by
Ming Tommy Tang
★ 3.9k
3
votes
3
replies
1.1k
views
Tutorial:
multi-omics data integration: a case study with transcriptomics and genomics mutation data
mutation
RNAseq
multiomics
updated 3 months ago by
sil_bioinfo
▴ 40 • written 8 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
355
views
Tutorial:
download metadata using GEOquery
computational-biology
GEO
metadata
updated 4 months ago by
Ram
43k • written 4 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
320
views
Tutorial:
CITEseq tutorial
CITEseq
Alevin
Seurat
4 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
2.9k
views
Comment:
Comment: New ebook: From cell line to Command line to learn computational biology
5 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
275
views
Blog:
How to use random forest for clustering
computational-biology
random-forest
updated 5 months ago by
Ram
43k • written 5 months ago by
Ming Tommy Tang
★ 3.9k
4
votes
2
replies
2.9k
views
News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
5 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
678
views
Comment:
Comment: FPKM values for DE analysis - Why?
5 months ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
519
views
Answer:
Answer: Ensembl transcript IDs
5 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
742
views
Answer:
Answer: Integration Seurat different healthy samples (fresh vs frozen)
5 months ago by
Ming Tommy Tang
★ 3.9k
2
votes
1
reply
466
views
Answer:
Answer: Designing Bioinformatic Pipeline to work on the Single cell RNA sequencing data
5 months ago by
Ming Tommy Tang
★ 3.9k
2
votes
1
reply
521
views
Answer:
Answer: Downstream analysis during sc-ATAC seq
5 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
511
views
Tutorial:
How to convert raw counts to TPM for TCGA data and make a heatmap across cancer types
RNAseq
heatmap
rstats
TCGA
6 months ago by
Ming Tommy Tang
★ 3.9k
3
votes
0
replies
1.5k
views
Answer:
Answer: Picking optimal resolution for single cell in seurat pipeline
6 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
574
views
Comment:
Comment: 10X scRNA-seq v2 odd fastq format
7 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
676
views
Comment:
Comment: How to run TRUST4 for BCR/TCR detection using 10X data?
7 months ago by
Ming Tommy Tang
★ 3.9k
3
votes
0
replies
678
views
Comment:
Comment: Seeking a real project
7 months ago by
Ming Tommy Tang
★ 3.9k
3
votes
0
replies
663
views
Answer:
Answer: Bulk and Single cell TCRSeq analysis
8 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
640
views
Answer:
Answer: Blocky p300 ChIP-seq reads
8 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
531
views
Comment:
Comment: How to choose the number of cluster in single cell multiome (RNA & ATAC)
8 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
672
views
Tutorial:
T Cell Clonal Analysis Using Single-cell RNA Sequencing and Reference Maps
RNAseq
TCR
single-cell
computational
biology
8 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
519
views
Tutorial:
cellular niches analysis with spatial transcriptome data in Seurat and Bioconductor
transcriptome
rstats
spatial
single-cell
8 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
754
views
Comment:
Comment: DMR Analysis for RRBS: what annotation file to I use?
8 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
1
reply
504
views
Comment:
Comment: How to resample contacts data to lower bins
8 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
671
views
Answer:
Answer: Phasing Classical HLA Alleles
8 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
628
views
Tutorial:
common mistakes in using spreadsheets
excel
spreadsheet
structured-data
updated 8 months ago by
Ram
43k • written 8 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
1.2k
views
Comment:
Comment: Convert files made for b37 into hg19 human reference?
8 months ago by
Ming Tommy Tang
★ 3.9k
1
vote
0
replies
681
views
Tutorial:
How to convert gene ids in R
computational-biology
gene-id
rstats
updated 9 months ago by
Ram
43k • written 9 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
1.1k
views
Comment:
Comment: How to use UCSC genome browser to check the transcription factor binding at your
9 months ago by
Ming Tommy Tang
★ 3.9k
0
votes
0
replies
661
views
Comment:
Comment: Is there a way to prove that two VCFs came from the same person?
9 months ago by
Ming Tommy Tang
★ 3.9k
2
votes
0
replies
3.2k
views
Tutorial:
How to read multiple matrices from GEO into R and make multiple Seurat objects and merge them into a single object.
unix
Seurat
single-cell
rstats
updated 9 months ago by
Ram
43k • written 9 months ago by
Ming Tommy Tang
★ 3.9k
4
votes
2
replies
1.1k
views
Tutorial:
How to use UCSC genome browser to check the transcription factor binding at your favorite gene
UCSC
transcription
factor
ChIP-seq
9 months ago by
Ming Tommy Tang
★ 3.9k
424 results • Page
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