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Answer: Answer: query PL field with bcftools
2.0 years ago by Stephane Plaisance ▴ 460
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Comment: C: Advice on assembling very large metagenomic dataset?
3.3 years ago by Stephane Plaisance ▴ 460
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4
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2.7k
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bcftools filtering on INFO fields
variants vcf bcftools variant
3.8 years ago by Stephane Plaisance ▴ 460
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2.7k
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Comment: A: bcftools filtering on INFO fields
3.8 years ago by Stephane Plaisance ▴ 460
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2.7k
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Comment: A: bcftools filtering on INFO fields
3.8 years ago by Stephane Plaisance ▴ 460
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31k
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Answer: A: Count Of Variants
3.8 years ago by Stephane Plaisance ▴ 460
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5.0k
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Comment: C: adding suffix /1 & /2 to PE data - abyss input data
3.9 years ago by Stephane Plaisance ▴ 460
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600
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how to best rotate a chloroplast plastid map
assembly plastid
3.9 years ago by Stephane Plaisance ▴ 460
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1.1k
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SNPEFF genome build with specific codon usage
SnpEff variants annotation
updated 3.9 years ago by 20 • written 4.0 years ago by ▴ 460
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1
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32k
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Comment: A: Biomart Bioconductor - Retrieving All Entrezgenes Of Hsapiens_Gene_Ensembl
updated 4.3 years ago by 43k • written 9.9 years ago by ▴ 460
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5
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Answer: A: Harvesting Known Disease Mutations
updated 4.6 years ago by 43k • written 12.6 years ago by ▴ 460
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1.1k
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Comment: C: sequencing to identify novel restriction sites
5.3 years ago by Stephane Plaisance ▴ 460
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2
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1.1k
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Comment: C: sequencing to identify novel restriction sites
5.3 years ago by Stephane Plaisance ▴ 460
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1
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1.1k
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Comment: A: sequencing to identify novel restriction sites
5.3 years ago by Stephane Plaisance ▴ 460
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9
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1.1k
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sequencing to identify novel restriction sites
sequencing
5.3 years ago by Stephane Plaisance ▴ 460
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1
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52k
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Comment: C: How To Split A Multiple Fasta
updated 5.4 years ago by 43k • written 6.9 years ago by ▴ 460
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57k
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Comment: C: Download All The Bacterial Genomes From Ncbi
5.5 years ago by Stephane Plaisance ▴ 460
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1
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2.7k
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Answer: A: bioawk output in original fastq format
updated 5.5 years ago by 81k • written 5.5 years ago by ▴ 460
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2
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4.4k
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Merging And De-Duplicating Structural Variant Calls (Bedpe)
intersect structural
updated 5.7 years ago by 20 • written 12.8 years ago by ▴ 460
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3.7k
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Answer: A: look for the old version blast (not blast+)
5.7 years ago by Stephane Plaisance ▴ 460
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17k
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Answer: A: Extracting Paired-End Reads Sitting In Different Chromosomes
5.8 years ago by Stephane Plaisance ▴ 460
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2.0k
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Comment: C: create a track with mismatch density from a SAM/bam file
6.2 years ago by Stephane Plaisance ▴ 460
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2.0k
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Answer: A: create a track with mismatch density from a SAM/bam file
6.2 years ago by Stephane Plaisance ▴ 460
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5
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2.0k
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create a track with mismatch density from a SAM/bam file
sam bam mismatch
6.2 years ago by Stephane Plaisance ▴ 460
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0
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2.0k
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Answer: A: create a track with mismatch density from a SAM/bam file
6.2 years ago by Stephane Plaisance ▴ 460
2
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31k
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Answer: A: Is Paired End analysis possible with FASTQC?
6.2 years ago by Stephane Plaisance ▴ 460
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15k
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Answer: A: Using the row order of one pheatmap to set the order of another. How to do it?
6.3 years ago by Stephane Plaisance ▴ 460
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1.4k
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Comment: C: bam-readcount does not accept Varscan native format for -l (feature request)
6.4 years ago by Stephane Plaisance ▴ 460
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1
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1.4k
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bam-readcount does not accept Varscan native format for -l (feature request)
varscan2
6.4 years ago by Stephane Plaisance ▴ 460
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1
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23k
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Comment: C: Building Snpeff Database
6.5 years ago by Stephane Plaisance ▴ 460
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11k
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Comment: C: Note: Neither --ploidy nor --ploidy-file given, assuming all sites are diploid [
6.7 years ago by Stephane Plaisance ▴ 460
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4.1k
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Comment: C: Tool to generate a chain file from an agp file
6.9 years ago by Stephane Plaisance ▴ 460
2
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0
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4.5k
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Comment: C: Best tools for lifting over genome coordinates for non model organism (custom) r
6.9 years ago by Stephane Plaisance ▴ 460
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Comment: C: How to Filter ENSembl to fetch more confident transcripts
7.0 years ago by Stephane Plaisance ▴ 460
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2
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2.4k
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Comment: C: How to Filter ENSembl to fetch more confident transcripts
7.0 years ago by Stephane Plaisance ▴ 460
2
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5
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2.4k
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How to Filter ENSembl to fetch more confident transcripts
ensembl biomart transcripts
updated 7.0 years ago by 23k • written 7.0 years ago by ▴ 460
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1
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1.7k
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Comment: A: bioperl Bio::SeqIO join + complement weirdness
7.1 years ago by Stephane Plaisance ▴ 460
2
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3
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1.7k
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bioperl Bio::SeqIO join + complement weirdness
bioperl
7.1 years ago by Stephane Plaisance ▴ 460
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0
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24k
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Comment: C: Converting Gff/Gtf + Reference To Embl Or Genbank ...Any Tools Available?
7.1 years ago by Stephane Plaisance ▴ 460
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6.4k
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Answer: A: Problems With Bioconductor'S Genomicfeatures Package
7.6 years ago by Stephane Plaisance ▴ 460
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1
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15k
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Answer: A: Extract Fasta Sequences Sub Sets
8.1 years ago by Stephane Plaisance ▴ 460
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1
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3.9k
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Bedtools map end with warning about a 'leading zero' error
bedtools
updated 20 months ago by 43k • written 8.4 years ago by ▴ 460
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18
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9.5k
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9 follow
Harvesting Known Disease Mutations
disease mutation variant human
updated 9.2 years ago by 20 • written 12.6 years ago by ▴ 460
2
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5.4k
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Answer: A: Tf-Target Enrichment Analysis
10.0 years ago by Stephane Plaisance ▴ 460
4
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5
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3.0k
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Mitochondrial Haplogroup Determination
updated 10.5 years ago by 20 • written 12.2 years ago by ▴ 460
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1
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3.0k
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Comment: C: Mitochondrial Haplogroup Determination
12.2 years ago by Stephane Plaisance ▴ 460
1
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0
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8.7k
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Answer: A: How To Remove Overlapping And Common Exons From Multiple Transcripts Of A Gene
12.4 years ago by Stephane Plaisance ▴ 460
1
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1
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7.0k
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Answer: A: Finding Reference Sequences And Interpretation Of Data From Repeatmasker Ucsc Ta
12.4 years ago by Stephane Plaisance ▴ 460
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9.5k
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Comment: C: Harvesting Known Disease Mutations
12.6 years ago by Stephane Plaisance ▴ 460
0
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0
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9.5k
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Comment: C: Harvesting Known Disease Mutations
12.6 years ago by Stephane Plaisance ▴ 460
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