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4
votes
3
replies
7.6k
views
Genotype representation with 0, 1, 2 - what do they mean?
genotype representation phasing imputation gwas
updated 20 days ago by • 0 • written 5.9 years ago by ▴ 180
1
vote
1
reply
482
views
Mapping gene coordinates to transcript exons
genes transcript positions exon
updated 2.1 years ago by 3.2k • written 2.1 years ago by ▴ 180
1
vote
2
replies
2.5k
views
Calculating frequencies of possible combinations of SNP genotypes in a population
genotype frequency allele
updated 2.6 years ago by • 0 • written 5.6 years ago by ▴ 180
2
votes
2
replies
747
views
Genotype imputation - do SNP IDs of input files and reference panels matter?
genotype SNP reference VCF imputation
updated 2.8 years ago by 2.8k • written 2.8 years ago by ▴ 180
19
votes
9
replies
20k
views
6 follow
Polygenic Risk Scores: Odds ratio or Beta-coefficient?
polygenic genetic risk score odds ratio
updated 2.8 years ago by ▴ 20 • written 5.6 years ago by ▴ 180
0
votes
1
reply
867
views
Multiple alleles in REF and ALT in VCF file
vcf allele indel bcftools vcftools
updated 3.2 years ago by 20 • written 3.3 years ago by ▴ 180
4
votes
3
replies
2.3k
views
Michigan Imputation Server - typed-only sites?
imputation SNP genotyping michigan vcf
updated 3.2 years ago by • 0 • written 4.1 years ago by ▴ 180
0
votes
1
reply
1.3k
views
Comment: C: VCF files - how to handle entries with identical ID but different positions and
4.1 years ago by Volka ▴ 180
0
votes
1
reply
1.3k
views
Comment: C: VCF files - how to handle entries with identical ID but different positions and
4.1 years ago by Volka ▴ 180
1
vote
6
replies
1.3k
views
VCF files - how to handle entries with identical ID but different positions and alleles?
Sanger duplicate VCF ID allele
4.1 years ago by Volka ▴ 180
14
votes
7
replies
7.2k
views
Running ANOVA in R on three tables of gene expression data
anova RNA-Seq microarray gene expression
updated 4.1 years ago by ▴ 10 • written 5.7 years ago by ▴ 180
0
votes
0
replies
2.5k
views
Comment: C: Calculating frequencies of possible combinations of SNP genotypes in a populatio
5.6 years ago by Volka ▴ 180
2
votes
2
replies
1.6k
views
Method to get all possible combinations of genotypes for a group of SNPs
combination genotype permutation python R
updated 5.6 years ago by ▴ 850 • written 5.6 years ago by ▴ 180
1
vote
3
replies
1.3k
views
How do microarray manufacturers decide on the number of probe pairs in a probeset?
Affymetrix microarray probe pair probeset
updated 5.6 years ago by ★ 1.9k • written 5.7 years ago by ▴ 180
0
votes
1
reply
3.1k
views
Comment: C: What is a faster way than using bcftool's view to extract a population from 1000
5.6 years ago by Volka ▴ 180
0
votes
1
reply
3.1k
views
Comment: C: What is a faster way than using bcftool's view to extract a population from 1000
5.6 years ago by Volka ▴ 180
2
votes
5
replies
3.1k
views
What is a faster way than using bcftool's view to extract a population from 1000 Genome VCF files?
bcftools 1000 vcf subset extract
updated 5.6 years ago by 10k • written 5.6 years ago by ▴ 180
0
votes
1
reply
7.2k
views
Comment: C: Running ANOVA in R on three tables of gene expression data
5.7 years ago by Volka ▴ 180
0
votes
1
reply
7.2k
views
Comment: C: Running ANOVA in R on three tables of gene expression data
5.7 years ago by Volka ▴ 180
0
votes
1
reply
1.2k
views
Comment: C: Do gene expression microarrays cover all genes in the transcriptome?
5.7 years ago by Volka ▴ 180
0
votes
4
replies
1.2k
views
Do gene expression microarrays cover all genes in the transcriptome?
affymetrix microarray gene transcript
5.7 years ago by Volka ▴ 180
0
votes
1
reply
1.4k
views
Need some help interpreting Michigan Server Imputation output statistics
chromosome x imputation michigan SNP genotype
5.8 years ago by Volka ▴ 180
4
votes
3
replies
1.3k
views
Microarray Probesets Quality Control - Why exclude non-autosomal probesets?
microarray quality control autosomes probesets
updated 5.9 years ago by 104k • written 5.9 years ago by ▴ 180
0
votes
0
replies
1.3k
views
Comment: C: Microarray Probesets Quality Control - Why exclude non-autosomal probesets?
5.9 years ago by Volka ▴ 180
2
votes
1
reply
3.7k
views
SNP pruning - Linkage disequilibrium measure, r2 (0.2), and minor allele frequency (0.05), why these values?
linkage disequilibrium minor allele frequency
updated 5.9 years ago by 87k • written 5.9 years ago by ▴ 180
6
votes
2
replies
2.6k
views
Plink sex check - why would female calls have more than 0 nonmissing Y genotypes?
plink gwas sex check
5.9 years ago by Volka ▴ 180
0
votes
1
reply
1.1k
views
Comment: C: More efficient way than zipping arrays for transposing a FinalReport table in Py
6.0 years ago by Volka ▴ 180
0
votes
4
replies
1.1k
views
More efficient way than zipping arrays for transposing a FinalReport table in Python?
python snp genome
6.0 years ago by Volka ▴ 180
28 results • Page 1 of 1
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