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Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
BaseRecalibrator mouse gatk
2.0 years ago by 乙 ▴ 210
1
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0
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968
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Answer: Answer: Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
2.0 years ago by 乙 ▴ 210
0
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0
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968
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Comment: Comment: Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
2.0 years ago by 乙 ▴ 210
22
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24
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19k
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8 follow
bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing methods by Illumina ?
bcl2fastq2 --use-bases-mask sequencing illumina
updated 2.6 years ago by ▴ 280 • written 5.5 years ago by ▴ 210
0
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1
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2.7k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
3.7 years ago by 乙 ▴ 210
11
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18
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2.7k
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6 follow
Is there a tool to find the correct percentage of duplication levels in FastQ ?
sequencing fastq
updated 3.8 years ago by 141k • written 3.8 years ago by ▴ 210
0
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0
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2.7k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
3.8 years ago by 乙 ▴ 210
0
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1
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2.7k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
3.8 years ago by 乙 ▴ 210
0
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1
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2.7k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
3.8 years ago by 乙 ▴ 210
0
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1
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2.7k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
3.8 years ago by 乙 ▴ 210
0
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0
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915
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Comment: C: Is it possible to get the Codons for an intron/splice mutation given the chromos
3.9 years ago by 乙 ▴ 210
0
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2
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915
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Is it possible to get the Codons for an intron/splice mutation given the chromosome and position?
codons introns
3.9 years ago by 乙 ▴ 210
6
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5
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915
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Is it possible to convert NC_ to NP_ for RefSeq ?
RefSeq
4.0 years ago by 乙 ▴ 210
0
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0
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915
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Comment: C: Is it possible to get convert all NC_ to NP_ for RefSeq ?
4.0 years ago by 乙 ▴ 210
0
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2
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915
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Comment: C: Is it possible to get convert all NC_ to NP_ for RefSeq ?
4.0 years ago by 乙 ▴ 210
1
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0
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1.8k
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What are the min/max of the MaxEntScan software ?
maxentscan
4.1 years ago by 乙 ▴ 210
1
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0
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778
views
Any changes to the frequencies of gnomAD v2.1 liftover ?
gnomAD liftovert hg19 hg38
4.2 years ago by 乙 ▴ 210
4
votes
9
replies
2.0k
views
Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37 ?
Ensembl RefSeq transcripts genes
updated 4.2 years ago by 23k • written 4.2 years ago by ▴ 210
0
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1
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2.0k
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
4.2 years ago by 乙 ▴ 210
0
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0
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2.0k
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
4.2 years ago by 乙 ▴ 210
0
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1
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2.0k
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
4.2 years ago by 乙 ▴ 210
0
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0
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2.1k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
4.7 years ago by 乙 ▴ 210
0
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1
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2.1k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
4.7 years ago by 乙 ▴ 210
0
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0
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4.0k
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Comment: C: Should the expression data be centered before PCA?
4.7 years ago by 乙 ▴ 210
0
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1
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2.1k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
4.7 years ago by 乙 ▴ 210
1
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2
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2.1k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
4.7 years ago by 乙 ▴ 210
3
votes
12
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2.1k
views
Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
decompression bcl2fastq2 fastq bcl raw
4.7 years ago by 乙 ▴ 210
13
votes
16
replies
3.1k
views
8 follow
RNA-seq: is there a way to get the variability between biological replicates ?
RNA-Seq
updated 5.1 years ago by 8.2k • written 5.1 years ago by ▴ 210
0
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0
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3.1k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
5.1 years ago by 乙 ▴ 210
0
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1
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3.1k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
5.1 years ago by 乙 ▴ 210
0
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1
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3.1k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
5.1 years ago by 乙 ▴ 210
1
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1
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3.1k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
5.1 years ago by 乙 ▴ 210
0
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0
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1.4k
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Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.1 years ago by 乙 ▴ 210
15
votes
14
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1.4k
views
RNA-seq: Is it worth to analyze case vs control separately to have a % similarity ?
RNA-Seq
updated 5.1 years ago by ★ 5.2k • written 5.1 years ago by ▴ 210
0
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0
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1.4k
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Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.1 years ago by 乙 ▴ 210
1
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0
replies
1.4k
views
Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.1 years ago by 乙 ▴ 210
0
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1
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1.4k
views
Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.1 years ago by 乙 ▴ 210
0
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1
reply
1.4k
views
Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.1 years ago by 乙 ▴ 210
0
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1
reply
1.4k
views
Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.1 years ago by 乙 ▴ 210
1
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1
reply
4.6k
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Comment: C: What does CSQ means in a VCF file annotated by VEP ?
5.1 years ago by 乙 ▴ 210
9
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3
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4.6k
views
What does CSQ means in a VCF file annotated by VEP ?
VCF CSQ
updated 5.1 years ago by 47k • written 5.1 years ago by ▴ 210
1
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1
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1.1k
views
Comment: C: MySQL: Mapping GRCh38 coordinates to GRCh37 using ensembldb
5.3 years ago by 乙 ▴ 210
1
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3
replies
1.1k
views
MySQL: Mapping GRCh38 coordinates to GRCh37 using ensembldb
ensembl MySQL Assembly mapping
updated 5.3 years ago by 161k • written 5.3 years ago by ▴ 210
0
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1
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19k
views
Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.5 years ago by 乙 ▴ 210
4
votes
15
replies
7.9k
views
9 follow
Using Circos plot to visualize RNA-seq data
Circos RNA-Seq visualization
updated 5.7 years ago by ★ 3.4k • written 5.7 years ago by ▴ 210
1
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1
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7.9k
views
Comment: C: Using Circos plot to visualize RNA-seq data
5.7 years ago by 乙 ▴ 210
0
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1
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7.9k
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Comment: C: Using Circos plot to visualize RNA-seq data
5.7 years ago by 乙 ▴ 210
0
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0
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7.9k
views
Comment: C: Using Circos plot to visualize RNA-seq data
5.7 years ago by 乙 ▴ 210
4
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7
replies
2.7k
views
HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R] ?
RNA-Seq HTSeq-count GenomicAlignments
5.9 years ago by 乙 ▴ 210
0
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1
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2.7k
views
Comment: C: HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R]
5.9 years ago by 乙 ▴ 210
64 results • Page 1 of 2
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