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Annotation transfer between QuPath (H&E) and 10X spatial transcriptomics Visium
alignment seurat spaceranger visium
7 weeks ago by Nicolas Rosewick 10k
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1
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449
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Comment: Comment: How do I add sample annotations to this data?
6 months ago by Nicolas Rosewick 10k
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464
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Comment: Comment: DESEQ2 analysis result
6 months ago by Nicolas Rosewick 10k
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425
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Comment: Comment: how to create a loop in R
7 months ago by Nicolas Rosewick 10k
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1.3k
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Answer: Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
7 months ago by Nicolas Rosewick 10k
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653
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Comment: Comment: How to understand if a GWAS sample comes from Chromosome X or Y
7 months ago by Nicolas Rosewick 10k
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2
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1.2k
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Comment: Comment: How to allocate memory and CPU without SLURM in a linux cluster?
9 months ago by Nicolas Rosewick 10k
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1
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765
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Answer: Answer: FindAllMarkers in Seurat and statistical problem
9 months ago by Nicolas Rosewick 10k
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1.8k
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Comment: Comment: Advantages of install.packages() versus BiocManager::install()
10 months ago by Nicolas Rosewick 10k
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548
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Answer: Answer: How to plot combined bar graph in R
11 months ago by Nicolas Rosewick 10k
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1
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776
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Comment: Comment: How can we separate downregulated genes and upregulated genes from list of dataf
11 months ago by Nicolas Rosewick 10k
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653
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Comment: Comment: Tophat: Genome indexing error
11 months ago by Nicolas Rosewick 10k
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0
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1.1k
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Answer: Answer: TCGAbiolinks
11 months ago by Nicolas Rosewick 10k
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3.9k
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Comment: Comment: Identifying long stretches of Ns
12 months ago by Nicolas Rosewick 10k
17
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14
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30k
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13 follow
Merge Paired-End Reads
fastq
updated 12 months ago by 43k • written 12.5 years ago by 10k
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1
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619
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Comment: Comment: Plink-association test
12 months ago by Nicolas Rosewick 10k
2
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1
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811
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Comment: Comment: differential gene analysis
13 months ago by Nicolas Rosewick 10k
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1
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527
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Comment: Comment: Find genes which are related to SNPs
13 months ago by Nicolas Rosewick 10k
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1
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812
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Comment: Comment: Bedtools multicov outfile file error
14 months ago by Nicolas Rosewick 10k
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677
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Comment: Comment: RNAseq matrix containing zero values
14 months ago by Nicolas Rosewick 10k
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1
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651
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Answer: Answer: How to do differential expression without having replicates
14 months ago by Nicolas Rosewick 10k
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1
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657
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Answer: Answer: GIAB and GRCh38
14 months ago by Nicolas Rosewick 10k
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2
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1.8k
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Comment: Comment: Error in VQSR first step
14 months ago by Nicolas Rosewick 10k
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0
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1.1k
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Comment: Comment: make BED file from existing BIM and FAM files
14 months ago by Nicolas Rosewick 10k
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1
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637
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Answer: Answer: Visualization of Enrichment score for spatial 10x visium samples
14 months ago by Nicolas Rosewick 10k
2
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1
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671
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Answer: Answer: Is it possible to do bedtools multicov across the entire genome?
14 months ago by Nicolas Rosewick 10k
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1
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1.3k
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Answer: Answer: IGV coverage bar has color, but no mutation?
14 months ago by Nicolas Rosewick 10k
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1
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1.3k
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Comment: Comment: IGV coverage bar has color, but no mutation?
14 months ago by Nicolas Rosewick 10k
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1
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2.6k
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Comment: Comment: How to increase the speed of miRanda target prediction program?
15 months ago by Nicolas Rosewick 10k
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792
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Job: Postdoctoral fellow in bioinformatics - ULB (Belgium)
Belgium
updated 16 months ago by 43k • written 16 months ago by 10k
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1.1k
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Comment: Comment: parallel for 10000 whole exome data
16 months ago by Nicolas Rosewick 10k
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0
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1.3k
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Comment: Comment: Discrepancy between genotype and reference genome build - issue with strand flip
18 months ago by Nicolas Rosewick 10k
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1
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1.3k
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Answer: Answer: Discrepancy between genotype and reference genome build - issue with strand flip
18 months ago by Nicolas Rosewick 10k
4
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0
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500
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Answer: Answer: pvalue vs adjust p-value
18 months ago by Nicolas Rosewick 10k
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1
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720
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Comment: Comment: What is the best way to pre-process RNA-Seq data?
19 months ago by Nicolas Rosewick 10k
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1
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1.5k
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Answer: Answer: Batch effect correction of RNAseq data using scRNAseq batch effect correction to
19 months ago by Nicolas Rosewick 10k
5
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4
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3.6k
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hg19 interval list
gatk genome interval hg19
updated 22 months ago by 4.2k • written 5.0 years ago by 10k
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1
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528
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Comment: Comment: Mutations in contiguous sites within a sample
23 months ago by Nicolas Rosewick 10k
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1
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1.0k
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Comment: Comment: Query hg37 rsid information
24 months ago by Nicolas Rosewick 10k
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1
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1.1k
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Comment: Comment: sc/sn RNASeq
2.1 years ago by Nicolas Rosewick 10k
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1
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1.1k
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Comment: Comment: sc/sn RNASeq
2.1 years ago by Nicolas Rosewick 10k
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1
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958
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Comment: Comment: inter and intra-sample variance in 10X visium spatial transcriptome data
2.2 years ago by Nicolas Rosewick 10k
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0
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673
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Comment: Comment: Reads mapping
2.2 years ago by Nicolas Rosewick 10k
1
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0
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461
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GWAS : normalization of continuous phenotype across different cohorts
gwas normalization
2.2 years ago by Nicolas Rosewick 10k
2
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1
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1.6k
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Comment: Comment: Inflated p-values in QQ-plot
2.2 years ago by Nicolas Rosewick 10k
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6
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2.1k
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plink : Batch effect issues after merge of two datasets
plink merge
updated 2.3 years ago by • 0 • written 3.1 years ago by 10k
1
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0
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63k
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Comment: Comment: Insert Size And Fragment Size ?
2.5 years ago by Nicolas Rosewick 10k
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0
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2.9k
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Comment: Comment: DESeq2 normalization - Found Difference in values when calculated manually
2.6 years ago by Nicolas Rosewick 10k
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1
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1.5k
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Comment: Comment: Best practice for running GATK VQSR on X chromosome
2.7 years ago by Nicolas Rosewick 10k
2
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7
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6.4k
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6 follow
GATK genomicsDBimport intervals for WGS
gatk genomicsdbimport
updated 2.8 years ago by ▴ 270 • written 5.1 years ago by 10k
1,078 results • Page 1 of 22
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