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questions
17
votes
10
replies
4.5k
views
Looking for a tool which provides mapping quality score distributions from BAM files
picard
samtools
multiqc
19 months ago by
Thomas
▴ 160
5
votes
1
reply
1.1k
views
What does samtools mean by 'orientation' when marking duplicates?
read_orientation
samtools
htslib
updated 2.6 years ago by
aw7
▴ 270 • written 2.6 years ago by
Thomas
▴ 160
9
votes
3
replies
1.5k
views
Salmon: Any downstream DEA tools which uses abundance estimate variation information?
salmon
deseq2
updated 3.9 years ago by
ATpoint
81k • written 5.2 years ago by
Thomas
▴ 160
1
vote
4
replies
2.5k
views
Problem starting and running Gmaj (MAF file viewer and manipulator)
Gmaj
JRE
Java
MAF
UCSC
updated 5.5 years ago by
Ram
43k • written 8.1 years ago by
Thomas
▴ 160
5
votes
5
replies
6.4k
views
Cufflinks gffread utility
cufflinks
gffread
gff
reverse complement
updated 5.6 years ago by
madzayasodara
• 0 • written 7.8 years ago by
Thomas
▴ 160
5
votes
4
replies
2.7k
views
Running Galaxy tools locally using bx-python
bx-python
Galaxy
MAF
Stitch-MAF-blocks
updated 20 months ago by
Ram
43k • written 8.2 years ago by
Thomas
▴ 160
0
votes
0
replies
1.2k
views
Annotate pairwise alignment with query sequence quality scores
alignment
quality scores
5.9 years ago by
Thomas
▴ 160
1
vote
1
reply
1.6k
views
Trouble running vcf2phyloviz.py
vcf2phyloviz
vcf
PyVCF
6.3 years ago by
Thomas
▴ 160
0
votes
0
replies
1.7k
views
freebayes VCF output (FREQ header)
freebayes
VCF
6.5 years ago by
Thomas
▴ 160
2
votes
5
replies
2.7k
views
Potential bug in mafsInRegion?
mafsInRegion
UCSC
UCSC_genome_browser
updated 6.9 years ago by
vakirlisnikos
▴ 20 • written 7.3 years ago by
Thomas
▴ 160
0
votes
1
reply
1.5k
views
Problem using MIRZA (miRNA target prediction tool)
mirza
miRNA target prediction
miRNA expression
7.1 years ago by
Thomas
▴ 160
0
votes
0
replies
1.7k
views
Problems installing CONTRAfold
contrafold
compiling
MIRZA
installation
7.1 years ago by
Thomas
▴ 160
1
vote
0
replies
1.9k
views
Calculate mirSVR scores for custom sequences?
miRNA
miRanda
mirSVR
Target
Prediction
7.9 years ago by
Thomas
▴ 160
8
votes
5
replies
3.3k
views
Ensembl BioMart - How to get Transcript IDs version increment?
Ensembl
transcript-IDs
Biomart
version
updated 20 months ago by
Ram
43k • written 8.2 years ago by
Thomas
▴ 160
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