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Comment: Comment: Complex multifactorial DE analysis with limma/edgeR based on rnaseq data
6 months ago by svlachavas ▴ 790
0
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1
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760
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Comment: Comment: Complex multifactorial DE analysis with limma/edgeR based on rnaseq data
6 months ago by svlachavas ▴ 790
2
votes
5
replies
760
views
Complex multifactorial DE analysis with limma/edgeR based on rnaseq data
R edgeR limma RNA-seq
updated 6 months ago by 3.9k • written 6 months ago by ▴ 790
0
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0
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15k
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Comment: Comment: plotting a dotplot with topGO output
2.2 years ago by svlachavas ▴ 790
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0
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1.8k
views
Comment: Comment: Interpretation of functional prediction pathogenicity scores regarding variants
3.0 years ago by svlachavas ▴ 790
2
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2
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1.8k
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Interpretation of functional prediction pathogenicity scores regarding variants with multiple transcripts in ANNOVAR
annovar pathogenicity cancer CADD
3.0 years ago by svlachavas ▴ 790
0
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1
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13k
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Comment: Comment: ENSMUSG number convert to gene name
3.1 years ago by svlachavas ▴ 790
0
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1
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13k
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Comment: Comment: ENSMUSG number convert to gene name
3.1 years ago by svlachavas ▴ 790
0
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1
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7.0k
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Comment: C: Finding the significance of the overlap between 2 or more gene sets using simula
3.1 years ago by svlachavas ▴ 790
0
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1
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7.0k
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Comment: A: Finding the significance of the overlap between 2 or more gene sets using simula
3.1 years ago by svlachavas ▴ 790
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1
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1.9k
views
Comment: C: How to select a "representative" transcript in multiple transcript variants from
3.1 years ago by svlachavas ▴ 790
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0
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1.9k
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Comment: C: How to select a "representative" transcript in multiple transcript variants from
3.1 years ago by svlachavas ▴ 790
5
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5
replies
1.9k
views
How to select a "representative" transcript in multiple transcript variants from annotation with ANNOVAR and gencode
annovar gencode transcript SNP annotation
3.1 years ago by svlachavas ▴ 790
0
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0
replies
1.1k
views
Analyze RPPA cancer data in R for clustering patients and differential protein expression
RPPA RPPanalyzer R clustering DE
3.4 years ago by svlachavas ▴ 790
0
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1
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4.4k
views
Comment: A: how do I find the genes which are common to and those which differ between multi
3.4 years ago by svlachavas ▴ 790
0
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0
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694
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Filtering somatic point mutations and CNV alterations on the gene level for multi-omics data integration
feature reduction somatic mutations multiomics
3.4 years ago by svlachavas ▴ 790
2
votes
1
reply
1.3k
views
Suggested pipeline to perform variant calling for cancer exome sequencing samples of PDX models
pdx variant calling WES liquid biopsy
updated 4.0 years ago by ▴ 30 • written 4.2 years ago by ▴ 790
0
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1
reply
925
views
Comment: C: Possible approach to select normal tissue samples for cancer RNA-Seq data withou
4.1 years ago by svlachavas ▴ 790
2
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3
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925
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Possible approach to select normal tissue samples for cancer RNA-Seq data without reference data for downstream analyses
R RNA-Seq DE batch-effect GTEx
updated 3 days ago by 43k • written 4.1 years ago by ▴ 790
0
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1
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38k
views
Comment: C: Survival analysis with gene expression
4.1 years ago by svlachavas ▴ 790
1
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1
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1.7k
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Answer: A: normalization after merging datasets
4.1 years ago by svlachavas ▴ 790
0
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1
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38k
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Comment: A: Survival analysis with gene expression
4.2 years ago by svlachavas ▴ 790
3
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1
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1.3k
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Answer: A: Best way for CNV phenotype association analysis.
4.2 years ago by svlachavas ▴ 790
0
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1
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1.2k
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Comment: C: Suggested tool or algorithm for accessing pathogenicity and prioritization of so
4.2 years ago by svlachavas ▴ 790
3
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3
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1.2k
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Suggested tool or algorithm for accessing pathogenicity and prioritization of somatic INDELs in cancer research
somatic variant annotation pathogenicity cancer
4.2 years ago by svlachavas ▴ 790
0
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0
replies
862
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Suggestion of specific tools/pipelines for the manipulation and analysis of VCF files after somatic copy number variant calling
vcf cnv facets CNA VCF analysis
4.2 years ago by svlachavas ▴ 790
0
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1
reply
1.8k
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Comment: C: Estimate tumor purity for liquid cancer biopsy samples of whole exome sequencing
4.2 years ago by svlachavas ▴ 790
0
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1
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1.8k
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Comment: C: Estimate tumor purity for liquid cancer biopsy samples of whole exome sequencing
4.3 years ago by svlachavas ▴ 790
4
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6
replies
1.8k
views
Estimate tumor purity for liquid cancer biopsy samples of whole exome sequencing data
variant calling tumor purity liquid biopsy WES
updated 4.3 years ago by ▴ 100 • written 4.3 years ago by ▴ 790
0
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1
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2.1k
views
Comment: C: Possible tools-programs for inspecting the relevance of DE genes to a specific c
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 790
1
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0
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2.4k
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Comment: C: filtering only differentially expressed genes
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 790
0
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1
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17k
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Comment: C: ggrepel: repel overlapping text labels in ggplot2
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 790
0
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0
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2.3k
views
Comment: C: Microarray Multimapping/Cross-hybridizing probesets
updated 4.4 years ago by 43k • written 8.3 years ago by ▴ 790
0
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2
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2.3k
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Comment: C: Microarray Multimapping probesets
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 790
1
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1
reply
3.5k
views
Answer: A: ReadAffy function of Affy R package
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 790
0
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1
reply
2.0k
views
Answer: A: how the data should look like after the normalization
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 790
5
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0
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6.5k
views
Answer: A: about microarray data analysis
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 790
0
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1
reply
2.5k
views
Comment: C: One gene association with cancer types
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 790
0
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1
reply
2.5k
views
Comment: C: One gene association with cancer types
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 790
0
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1
reply
2.5k
views
Comment: C: One gene association with cancer types
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 790
0
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0
replies
1.9k
views
Comment: C: Dataset normalization before gene ontology analysis
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 790
0
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1
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1.9k
views
Answer: A: Dataset normalization before gene ontology analysis
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 790
0
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0
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2.2k
views
Answer: A: gene set for pathway analysis
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 790
0
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0
replies
1.5k
views
Answer: A: How to find biological meaning of my results at probe level ?
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 790
0
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1
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3.2k
views
Comment: C: Possible methodology implemented in R/Bioconductor packages to integrate and ana
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 790
0
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1
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3.2k
views
Comment: C: Possible methodology implemented in R/Bioconductor packages to integrate and ana
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 790
1
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1
reply
9.1k
views
Comment: C: Limma Contrast matrix
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 790
0
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1
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9.1k
views
Comment: C: Limma Contrast matrix
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 790
1
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1
reply
9.1k
views
Comment: C: Limma Contrast matrix
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 790
2
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2
replies
9.1k
views
Comment: C: Limma Contrast matrix
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 790
169 results • Page 1 of 4
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