Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
8
votes
7
replies
12k
views
6 follow
DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
deseq2 RNA-Seq R
updated 16 months ago by 43k • written 8.8 years ago by ▴ 640
0
votes
1
reply
1.8k
views
Comment: C: Filtering large VCFs by allele freqency using bcftools split-vep function
3.4 years ago by scchess ▴ 640
0
votes
0
replies
4.6k
views
Comment: C: VariantFiltration warning "undefined variable"
3.8 years ago by scchess ▴ 640
0
votes
0
replies
283k
views
Comment: C: How To Filter Mapped Reads With Samtools
4.0 years ago by scchess ▴ 640
0
votes
0
replies
22k
views
Comment: C: single line fasta to mult line fasta
4.1 years ago by scchess ▴ 640
0
votes
0
replies
5.0k
views
Comment: C: What's the precise definition for sensitivity and specificity for alignment?
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 640
0
votes
0
replies
12k
views
Answer: A: Cufflinks Segmentation Fault
updated 4.4 years ago by 43k • written 8.8 years ago by ▴ 640
0
votes
1
reply
7.2k
views
Comment: C: How to calculate overall coverage in de novo metagenomics assembly?
updated 4.5 years ago by 43k • written 8.9 years ago by ▴ 640
0
votes
1
reply
7.2k
views
Comment: C: How to calculate overall coverage in de novo assembly?
updated 4.5 years ago by 43k • written 8.9 years ago by ▴ 640
0
votes
0
replies
4.9k
views
Answer: A: Differential expression without technical replicates
updated 4.5 years ago by 43k • written 8.9 years ago by ▴ 640
0
votes
1
reply
13k
views
Comment: C: How to map contigs to the reference genome and know the start and end position?
5.0 years ago by scchess ▴ 640
0
votes
0
replies
9.4k
views
Comment: C: Producing the Reverse-complement of each sequence in fastq files
5.0 years ago by scchess ▴ 640
3
votes
3
replies
4.7k
views
How to convert VarScan TAB format to VCF?
genome varscan2
updated 5.1 years ago by ▴ 20 • written 8.0 years ago by ▴ 640
0
votes
1
reply
198k
views
Comment: C: Correct Way To Parse A Fasta File In Python
5.1 years ago by scchess ▴ 640
0
votes
1
reply
9.7k
views
Comment: C: CDS vs cDNA vs transcript for mapping RNA-Seq reads
5.2 years ago by scchess ▴ 640
0
votes
0
replies
14k
views
Comment: C: Indel Left/Right Alignment
5.2 years ago by scchess ▴ 640
0
votes
0
replies
23k
views
Comment: C: How to order columns of heatmap as they are in matrix data
5.3 years ago by scchess ▴ 640
0
votes
0
replies
10k
views
Comment: C: How to get just protein_coding genes using biomart in R
5.4 years ago by scchess ▴ 640
0
votes
0
replies
4.5k
views
Comment: C: How to separate htseq-count table to coding RNAs and non-coding RNAs
5.4 years ago by scchess ▴ 640
0
votes
0
replies
4.5k
views
Comment: C: How to separate htseq-count table to coding RNAs and non-coding RNAs
5.4 years ago by scchess ▴ 640
18
votes
9
replies
4.7k
views
Is Sleuth a good package?
RNA-Seq R kallisto sleuth
5.4 years ago by scchess ▴ 640
0
votes
0
replies
32k
views
Comment: C: extract only geneID and gene symbol from GTF file
5.4 years ago by scchess ▴ 640
0
votes
0
replies
5.3k
views
Comment: C: PED file format for use with GATK PhaseByTransmission
5.7 years ago by scchess ▴ 640
0
votes
0
replies
3.6k
views
Comment: C: gVCF files into Plink!
5.7 years ago by scchess ▴ 640
0
votes
0
replies
3.4k
views
Comment: C: split fasta of a protein sequence into consecutive n amino acids
5.7 years ago by scchess ▴ 640
0
votes
0
replies
8.0k
views
Comment: C: Finding Kmers From Fasta File
5.7 years ago by scchess ▴ 640
5
votes
1
reply
15k
views
Answer: A: fasta file to tab delimited file
updated 5.8 years ago by 16k • written 5.8 years ago by ▴ 640
0
votes
2
replies
15k
views
Comment: C: fasta file to tab delimited file
5.8 years ago by scchess ▴ 640
0
votes
1
reply
15k
views
Comment: C: fasta file to tab delimited file
5.8 years ago by scchess ▴ 640
0
votes
0
replies
11k
views
Comment: C: Annotation for SV and CNV
5.8 years ago by scchess ▴ 640
0
votes
1
reply
2.2k
views
Comment: C: SOS -- MuTect is picking up obvious germline mutations
5.9 years ago by scchess ▴ 640
0
votes
0
replies
7.8k
views
Answer: A: Dbsnp In Vcf
5.9 years ago by scchess ▴ 640
0
votes
0
replies
7.8k
views
Comment: C: Dbsnp In Vcf
5.9 years ago by scchess ▴ 640
0
votes
0
replies
7.8k
views
Comment: C: Dbsnp In Vcf
5.9 years ago by scchess ▴ 640
0
votes
0
replies
5.6k
views
Comment: C: Randomly Split A Fastq File
6.6 years ago by scchess ▴ 640
0
votes
0
replies
6.9k
views
Answer: A: K-mers using JEllyfish
6.8 years ago by scchess ▴ 640
0
votes
0
replies
1.8k
views
Comment: C: Bug in RUV spike-in normalization?
6.9 years ago by scchess ▴ 640
2
votes
2
replies
1.8k
views
Bug in RUV spike-in normalization?
RNA-Seq statistics biostatistics
updated 6.9 years ago by ▴ 260 • written 7.3 years ago by ▴ 640
0
votes
1
reply
5.0k
views
Comment: C: Individual whole genome sequence data download FASTQ
7.0 years ago by scchess ▴ 640
3
votes
3
replies
3.5k
views
How to fix my broken GTF file?
gtf
updated 7.0 years ago by 5.0k • written 7.0 years ago by ▴ 640
4
votes
4
replies
2.2k
views
How cuffcompare calculates sensitivity and specificity?
cufflinks statistics
updated 21 months ago by 43k • written 9.0 years ago by ▴ 640
5
votes
2
replies
3.4k
views
How should I choose? Decoy or not?
genome
updated 11 months ago by • 0 • written 7.0 years ago by ▴ 640
1
vote
0
replies
12k
views
Comment: C: How to count SNPs, InDels
7.1 years ago by scchess ▴ 640
1
vote
3
replies
1.3k
views
Management software for my samples?
rna-seq sequencing
7.1 years ago by scchess ▴ 640
0
votes
0
replies
8.8k
views
Comment: C: Automatic IGV snapshot script
7.1 years ago by scchess ▴ 640
13
votes
3
replies
7.1k
views
How to sort VCF "chr1, chr2..."
vcf
updated 7.2 years ago by ★ 2.7k • written 7.2 years ago by ▴ 640
0
votes
0
replies
7.1k
views
Comment: C: How to sort VCF "chr1, chr2..."
7.2 years ago by scchess ▴ 640
0
votes
0
replies
7.3k
views
Comment: C: How To Reorder Bam File Contigs For The Gatk Pipeline
7.2 years ago by scchess ▴ 640
4
votes
1
reply
5.4k
views
Comment: C: Develop an R package for CRAN vs BioConductor
7.2 years ago by scchess ▴ 640
0
votes
0
replies
3.2k
views
Comment: C: Troubleshooting low quality mapping
7.2 years ago by scchess ▴ 640
124 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6